Lotus japonicus: 130749476
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Entry
130749476 CDS
T04348
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130749476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130749476
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130749476
mRNA degradation factors
5'-3' decay
Decapping complex
130749476
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
130749476
NCBI-ProteinID:
XP_057458827
LinkDB
All DBs
Position
3:complement(3688277..3700324)
Genome browser
AA seq
883 aa
AA seq
DB search
MDGFGVGGVPNTQDLKQPEHVSKEGAVFDSSQYAFFGKDTAEEFELGGLEEEDDNLPAVG
FNEEEFFLNTEEADDVRSLSDIDDLTTTFLKLNKVVSGPRSAGVIGDRGSRENSSASEWS
QRDDIPYWADQHTYDSECSQDGKRWSSHPHSSLSHLQESKPLYRTSSYPEQQRQQQHHLQ
HCSSEPFSNWFDQHFYDNETAEDGKRWSSHPHPSIAHLQESKPLYRTSSYPEQQQELPRF
NSEPILAPKSAFTSYPPPGGRSQQSSPHHSTGHLNIPYHDGGAQMALLSQNRSHFFNSAL
QSSGSKHESHFSGNLRQLSAGSPLNHQIQNPWVNHTALYPGDHPNLLNNMLQQQLRHHDG
SVSSHLLTQLQQQPHRLHHPIQQSAGYMSGFQSHLFNPHLSSGSSIVNKYEHMLGLGDFR
EHRPKSTHKGRQSHRFSHHGSDASSQKSDSGSLQFRSKYMTSDEIESILKMQLAVTHCNN
PYVDDYYHQACLAKKTGSKLKHSFCPTQIKDLSSRARTNSEPHGFLQVDALGRVSFLGIR
QPRPLLEVDPPPNSSTSAGSSERNISEKPLEKEPLFAARVTIEDGLCLLLDVDDIDRFLQ
SNQLQDGGTQLRRRRKVLLEGLAASLQLVDPLGKNGQKVGLAAKDDLVFLRLVSLPKGRK
LIAKCLRLLVPGSEFMRIVCMAIFRHLRFLFGGLPSDPAAAETTSDLAKVVCRCVQGMDL
GALSACLAAVVCSSEQPPLRPLGNTAGDGASLILVSVLERATELLTDPHAAASNYNIGNR
SFWQASFDEFFGLLTKYCMNKYHSIMQSLVTQGAPNVAVIGSDAAKAISKEMPVELLRAS
LPHTDDHQRKLLLDFAQRSVPVVGLSSYAGSSSGHVNSETVLS
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggatgggtttggtgttgggggtgttcccaacacacaagatcttaagcaaccggaacat
gttagcaaagaaggtgcagtatttgattcatcgcaatatgcattctttggtaaagatact
gctgaggaatttgagttggggggattagaagaggaagatgacaacttgcctgctgttggg
ttcaatgaggaggagtttttcctcaatactgaagaggcggatgatgttagatctctttct
gatattgatgatctcaccaccacatttttaaagctgaacaaagttgttagtgggccaaga
agcgccggagtcattggtgatcgaggatcgagagaaaattcttctgcttctgaatggtca
caaagggatgatattccttactgggctgaccagcacacttatgacagtgaatgttctcag
gatggaaaaagatggtcgtcgcatccccattcttcactctctcatctacaagaatcaaag
cccttgtacagaacatcttcatatcctgagcagcaacggcagcagcagcaccaccttcaa
cattgctctagtgaacctttttctaactggtttgatcagcacttttatgataatgaaact
gccgaggatgggaagagatggtcatcacacccacatccctccattgcacacttacaagaa
tcaaagcccttgtacaggacatcttcatatcctgaacagcaacaggagcttcctcgtttt
aatagtgaaccaattttggcaccaaaatctgcatttacttcttatcctccccctggcggt
aggtcccaacagtcttctccacatcacagtacaggccacttgaacattccttatcatgac
gggggagctcagatggcattattgtcacaaaaccgttctcatttcttcaattctgcacta
cagtcgagtggatcaaaacatgagtcacattttagtggaaatttgcgccaattaagtgct
ggctcccctcttaatcatcaaatccagaatccatgggtcaaccatacagcactatatcct
ggagatcatccaaacctcctgaataatatgctgcagcaacagttacgccatcatgatgga
tcagtgtcttctcacctactgactcaattgcagcaacagccacatagactgcatcatcct
attcagcaatcagcgggctacatgtcaggtttccagtcccatttatttaatccccatctt
tcttctgggtcgtccatagttaacaaatatgaacatatgcttggtctgggtgattttaga
gagcatagaccaaaatcaactcataaaggtagacagagtcatcgtttctcccatcatggt
tctgatgccagtagccagaagagcgatagtggttcactacagtttagatccaagtatatg
actagtgatgaaattgagagtattcttaaaatgcagcttgcagtaactcattgtaataac
ccctatgtagatgactattatcaccaagcatgtctcgcgaaaaaaactgggtccaagttg
aagcattcgttttgccctacccaaataaaggatctttcttcacgagcccgtaccaatagt
gagccgcatggttttctccaggttgatgctttagggagggtttcattcttgggtattcgt
cagcctcgccctcttcttgaagttgatcctcctccaaactcttctaccagtgctggaagc
tctgagcgaaatatttcagagaagccccttgaaaaggagcctttgtttgcagccagggtc
accattgaggatggtctctgtcttcttcttgatgtagatgatattgatcgttttctacag
tctaatcagttacaagatggcggaactcaattaagacggagacggaaggtccttttagaa
gggctagctgcatcacttcaactcgttgacccactaggaaagaatggacagaaagttggg
cttgctgctaaggatgaccttgttttcttaagattagtatcccttcccaagggacgaaag
ctcatagcaaagtgtcttcggttgcttgttcctggtagtgagttcatgcggatagtctgc
atggctatatttcgtcatttaagattcttatttggaggtctcccctctgatcctgcagct
gcagagactaccagtgaccttgctaaggttgtttgtcgatgtgtccaaggaatggatctc
ggtgctcttagtgcgtgtcttgcagcagtggtctgttcctcagagcagcctcctctacgc
cccctcggaaacactgctggggatggtgcttctcttattttagtatctgttcttgagaga
gctactgaacttttaactgatcctcatgctgctgctagcaactataatataggtaatcgt
tcattttggcaggcctcatttgatgaattttttggccttctcacgaagtattgcatgaat
aaataccatagcatcatgcaatcgctggttacacaaggggcaccaaatgtggctgtaatt
ggatcagatgctgctaaagcaattagtaaggaaatgcctgttgaactcttacgtgcaagt
cttcctcacactgatgaccaccagaggaagttgttactggattttgctcagcgctccgtg
cctgtggttggactgagcagctatgccggcagcagtagcggtcacgtgaactcagagaca
gtgctaagttga
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