Lotus japonicus: Lj1g3v4834030.1
Help
Entry
Lj1g3v4834030.1 CDS
T04348
Symbol
Lj1g3v4834030.1
Name
(Kazusa) -
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Lj1g3v4834030.1 (Lj1g3v4834030.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
Lj1g3v4834030.1 (Lj1g3v4834030.1)
03009 Ribosome biogenesis [BR:
lja03009
]
Lj1g3v4834030.1 (Lj1g3v4834030.1)
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Lj1g3v4834030.1 (Lj1g3v4834030.1)
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 related factors
Lj1g3v4834030.1 (Lj1g3v4834030.1)
Complex B
Lj1g3v4834030.1 (Lj1g3v4834030.1)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
Lj1g3v4834030.1 (Lj1g3v4834030.1)
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
90S particles
Helicases
Lj1g3v4834030.1 (Lj1g3v4834030.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
Motif
LinkDB
All DBs
AA seq
559 aa
AA seq
DB search
MLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEK
FQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEE
EIEDACRKISKEVSNLGDQVGAVKAVPLYSTLPPAMQQKIFEPAPPPLKEGGPPGRKIVV
STNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPG
KCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRA
LEVLNYLGALDDEGNLTKLGEIMSEFPLDPLMSKMLVVSPEFNCSNEMLSIAAMLSVPNC
FVRPREAQKAADEAKATFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFVNHRALKSADN
VRQQLLRIMGRFNLKLCSTDFNSRDYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVV
HLHPSTCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQGEAKRG
LEKLYKKREKEKEKTRSRK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgctcttgagagaagcaatgacagatccacttttggaacgatacaaagttattattctt
gatgaggctcatgaaaggactttggctacagatgtgctatttggtcttctcaaagaagtg
cttaaaaatagacctgacttgaagttggttgtcatgagtgcaacacttgaagctgaaaag
tttcagggctatttttttggtgcccctctaatgaaagttcctggaaggctacaccctgtt
gaaattttctatacacaagaacccgagagggattacttggaggctgctattaggacagtg
gtacaaatacacacatgtgaacctcctggggatatactcgtatttcttactggagaagaa
gagatagaagatgcatgccgcaaaatatcaaaagaagtttctaatctgggagaccaggtg
ggcgctgtgaaagcggtacccctgtattccactcttcctccagctatgcagcagaagatt
tttgagccagctccacctccactgaaggagggtggcccccctggaaggaagattgtggta
tcaacaaacatagcagaaacttccttaacaattgatggtattgtctatgttattgaccct
ggttttgctaagcagaaggtttataacccacgagtgcgtgtggagtctctattagtgtca
ccaatatcgaaagccagtgcacaccagagatcagggcgtgctggaagaacacaaccaggg
aaatgttttagactttatactgagagaagtttcaataatgatcttcagccacagacctat
cctgagattttgagatccaatcttgccaacacagttcttactttgaagaaactgggtata
gatgatttggtgcattttgatttcatggaccctcctgcccctgagaccttaatgcgtgca
ttggaagtcttgaattatttgggcgcacttgatgacgaagggaacttaacaaaactgggt
gaaattatgagtgaatttcccttggatccactgatgtcaaagatgctcgtagttagtcct
gaattcaactgttcaaacgagatgctttcaattgctgccatgctttcagtacccaattgc
tttgtccggcctagggaggcacaaaaagctgcagacgaggctaaagctacgtttgggcac
attgatggagatcatctcacgctcttgaatgtctaccatgcgtacaaacaaaataatgag
gatccctcttggtgctacgataacttcgttaatcacagggcattgaaatctgctgataat
gttaggcaacaactattgcgcatcatgggccgatttaacctgaagttatgcagcactgac
tttaatagtcgtgattactatgtcaacataagaaaggctatgctttctggatatttcatg
caggtagctcatctggagcgtacaggacactacttgacagtgaaagacaaccaggtggtg
catttgcatccttcaacttgcctggaccacaagcctgaatgggttatatataatgaatat
gttcttaccagtcgaaatttcattcgtactgtgacagacatacgtggggaatggttggtt
gacatagcaccacattactatgatttgacaaattttccacaaggtgaggcaaagcgtggt
cttgagaaactttacaagaagcgagagaaggaaaaggagaaaaccaggagccgcaaatga
DBGET
integrated database retrieval system
