KEGG   Lotus japonicus: Lj3g3v3097580.1
Entry
Lj3g3v3097580.1   CDS       T04348                                 
Symbol
Lj3g3v3097580.1
Name
(Kazusa) -
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:lja03000]
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
   03019 Messenger RNA biogenesis [BR:lja03019]
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
   04121 Ubiquitin system [BR:lja04121]
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
Enzymes [BR:lja01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     Lj3g3v3097580.1 (Lj3g3v3097580.1)
Transcription factors [BR:lja03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Lj3g3v3097580.1 (Lj3g3v3097580.1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     Lj3g3v3097580.1 (Lj3g3v3097580.1)
Ubiquitin system [BR:lja04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    Lj3g3v3097580.1 (Lj3g3v3097580.1)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Rtf2 Baculo_IE-1 Nup35_RRM_2 zf-RING_2 zf-UDP ATG1-like_MIT2 Nup35_RRM FYVE SET_assoc zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX
LinkDB
AA seq 195 aa
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY
DKKKIVGMAATCERLVSEIHMEKKMKNQKKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNL
ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG
FILEGRPLRYKYLFY
NT seq 591 nt   +upstreamnt  +downstreamnt
atgagtgatgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat
cagcagctgaagccttgcaaatgtggttatgagatctgtgtctggtgttggcaccacata
atggacatggctgagaaggatgacactgaggggcgatgcccagcgtgtcgttctccttat
gataagaaaaagatagttgggatggctgcaacctgtgagagattggtgagtgaaattcat
atggagaaaaagatgaagaatcaaaaaaagtctaaatcttctgatggaaggaagcaactt
agcagtgtgagagtgattcagcgtaaccttgtttacatagtaggattgcctctcaatctg
gcagatgaagatcttctccagcggcgagagtactttgctcagtatgggaaggtcttaaaa
gtgtcgatgtctcggacagcagctggtgtcattcaacagtttccaaatgatacttgcagt
gtatatattacttattcaaaggaagaggaagcaattcgttgtattcaaaatgtacatgga
tttattttggagggtagacctttaaggtacaaatatttgttttattgaaac

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