Lotus japonicus: Lj3g3v3097580.1
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Entry
Lj3g3v3097580.1 CDS
T04348
Symbol
Lj3g3v3097580.1
Name
(Kazusa) -
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lj3g3v3097580.1 (Lj3g3v3097580.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lja03000
]
Lj3g3v3097580.1 (Lj3g3v3097580.1)
03019 Messenger RNA biogenesis [BR:
lja03019
]
Lj3g3v3097580.1 (Lj3g3v3097580.1)
04121 Ubiquitin system [BR:
lja04121
]
Lj3g3v3097580.1 (Lj3g3v3097580.1)
Enzymes [BR:
lja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
Lj3g3v3097580.1 (Lj3g3v3097580.1)
Transcription factors [BR:
lja03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
Lj3g3v3097580.1 (Lj3g3v3097580.1)
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Lj3g3v3097580.1 (Lj3g3v3097580.1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Lj3g3v3097580.1 (Lj3g3v3097580.1)
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
Lj3g3v3097580.1 (Lj3g3v3097580.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Rtf2
Baculo_IE-1
Nup35_RRM_2
zf-RING_2
zf-UDP
ATG1-like_MIT2
Nup35_RRM
FYVE
SET_assoc
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
Motif
LinkDB
All DBs
AA seq
195 aa
AA seq
DB search
MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPY
DKKKIVGMAATCERLVSEIHMEKKMKNQKKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNL
ADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHG
FILEGRPLRYKYLFY
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagat
cagcagctgaagccttgcaaatgtggttatgagatctgtgtctggtgttggcaccacata
atggacatggctgagaaggatgacactgaggggcgatgcccagcgtgtcgttctccttat
gataagaaaaagatagttgggatggctgcaacctgtgagagattggtgagtgaaattcat
atggagaaaaagatgaagaatcaaaaaaagtctaaatcttctgatggaaggaagcaactt
agcagtgtgagagtgattcagcgtaaccttgtttacatagtaggattgcctctcaatctg
gcagatgaagatcttctccagcggcgagagtactttgctcagtatgggaaggtcttaaaa
gtgtcgatgtctcggacagcagctggtgtcattcaacagtttccaaatgatacttgcagt
gtatatattacttattcaaaggaagaggaagcaattcgttgtattcaaaatgtacatgga
tttattttggagggtagacctttaaggtacaaatatttgttttattgaaac
DBGET
integrated database retrieval system