Lotus japonicus: Lj5g3v1575200.1
Help
Entry
Lj5g3v1575200.1 CDS
T04348
Symbol
Lj5g3v1575200.1
Name
(Kazusa) -
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Lj5g3v1575200.1 (Lj5g3v1575200.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
Lj5g3v1575200.1 (Lj5g3v1575200.1)
03009 Ribosome biogenesis [BR:
lja03009
]
Lj5g3v1575200.1 (Lj5g3v1575200.1)
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Lj5g3v1575200.1 (Lj5g3v1575200.1)
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 related factors
Lj5g3v1575200.1 (Lj5g3v1575200.1)
Complex B
Lj5g3v1575200.1 (Lj5g3v1575200.1)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
Lj5g3v1575200.1 (Lj5g3v1575200.1)
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
90S particles
Helicases
Lj5g3v1575200.1 (Lj5g3v1575200.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_N
DEAD
Helicase_C
AAA_22
HA2_C
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
AAA_33
Flavi_DEAD
AAA_7
T2SSE
FtsK_SpoIIIE
AAA_30
TsaE
TrwB_AAD_bind
PhoH
Motif
LinkDB
All DBs
AA seq
537 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSAVKMAKTNGATSLINHWTGKPYSQRYYDILEKRKTLPVWLQK
EEFFKALRENQTLILVGETGSGKTTQIPQFVLEAVDLESPDRRGKMMVACTQPRRVAAMS
VSRRVAEEMDVTIGEEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMADPLLDRYKVIILD
EAHERTLATDVLFGLLKEVLKNRRDLKLVVMSATLEAEKFQGYFSGAPLMKVPGRLHPVE
IFYTQEPERDYLEAAIRTVVQIHLCEPPGDILVFLTGEEEIEDACRKINKEVSNLGDQVG
PLKVVPLYSTLPPAMQQKIFEAAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYP
EILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGE
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSDSCSFSVFSHEEIGVVSPLCIC
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagagaggaagcggaaggtgagtttgtttgatgtggtggacgactccgccgtc
aagatggccaaaaccaacggcgccaccagcctcataaaccactggaccgggaaaccttac
tcccagcggtactacgacattctcgagaaacggaaaaccctccccgtctggctccagaag
gaagagttcttcaaggctttgcgcgaaaaccagactctcattctcgttggtgaaactggt
agtggtaaaaccacacagattcctcagtttgttctggaagcggttgatttagagagccct
gatagacgcgggaagatgatggttgcatgcactcagccgcgtagagtggctgcgatgtct
gtttcccgccgtgtggctgaagagatggatgtcactattggagaagaggttggttatagc
atcagatttgaggattgcagtagttccaagacggttttgaagtatcttacagatggtatg
cttttgagagaagcaatggcggatccgcttttggaccgatacaaagtaattattcttgac
gaggcgcatgaaaggactttggccacggatgtgctgtttggtcttcttaaggaagtactt
aaaaatagacgtgacctgaagttggttgttatgagtgcaacacttgaagctgaaaagttt
cagggctatttttccggggcgcctcttatgaaagtgcctggaaggctacatccggtggaa
attttctacactcaggagccagaaagagattacttggaggcggctattaggacagttgta
cagatacacttgtgtgagcctcctggagatatacttgttttccttactggggaggaagag
atagaagatgcatgccgcaaaataaataaagaagtttcaaatttgggagaccaggtggga
cctttgaaagtggtacccttgtactctacacttcctccagctatgcagcagaagattttt
gaagcagctccacctccagttaaagagggagggcctcctggaaggaagattgtggtatca
actaacattgcagaaacttccttgacaattgatggtatagtctatgttattgaccctggg
tttgctaagcagaaggtttataaccctcgagttcgggtcgagtctttgttggtgtctcca
atatcaaaggctagtgcacaccagagatctgggcgtgctggaagaactcagccagggaaa
tgttttagactttacactgaaagaagtttcaataatgatcttcagccgcaaacctatcct
gaaattttgagatctaatcttgcgaacacagttcttaccttaaagaaacttggtatagat
gatttagtgcattttgatttcatggaccctcctgcccccgagaccttaatgcgcgctttg
gaagtattgaattacttgggtgcacttgatgatgagggtaacttaacaaagctgggtgag
attatgagtgaatttccattggatcctcagatgtcaaagatgcttgttgttagtcctgag
ttcaactgttcaaatgagattctttcaatttcagccatgctatcagatagttgcagtttc
tcagtattctctcatgaagaaattggtgtcgtctcgcctctatgcatctgctga
DBGET
integrated database retrieval system
