KEGG   Lotus japonicus: Lj6g3v1946230.1
Entry
Lj6g3v1946230.1   CDS       T04348                                 
Symbol
Lj6g3v1946230.1
Name
(Kazusa) -
  KO
K10609  cullin 4
Organism
lja  Lotus japonicus
Pathway
lja03420  Nucleotide excision repair
lja04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    Lj6g3v1946230.1 (Lj6g3v1946230.1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    Lj6g3v1946230.1 (Lj6g3v1946230.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lja04121]
    Lj6g3v1946230.1 (Lj6g3v1946230.1)
   03400 DNA repair and recombination proteins [BR:lja03400]
    Lj6g3v1946230.1 (Lj6g3v1946230.1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lja04147]
    Lj6g3v1946230.1 (Lj6g3v1946230.1)
Ubiquitin system [BR:lja04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Cullin
     Lj6g3v1946230.1 (Lj6g3v1946230.1)
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      Lj6g3v1946230.1 (Lj6g3v1946230.1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      Lj6g3v1946230.1 (Lj6g3v1946230.1)
Exosome [BR:lja04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   Lj6g3v1946230.1 (Lj6g3v1946230.1)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
LinkDB
AA seq 768 aa
MSLPTKRSASASSSPTTAAAAPMKKQKPLSSHSDSDSAAAALMPLDDDLKPSNAVGLMAA
NLARKKATPPQPPKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPDSCDLEKLY
QAVSDLCLYKMGGNLYQRIEKECEVHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQML
MIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVQHKTVTGLLRMIESERLGE
AVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRL
QEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGNRIEDLQRIYSLFS
RVNALESLRQAISSYIRKTGQGVVMDDEKDKDMVSSLLEFKASLDTIWEESFFKNEAFCN
TIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDV
FEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESF
KQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRL
MWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRT
LQSLACGKVRVLQKTPKGRDVEDDDSFDFNDGFTAPLYRIKVNAIQLKETVEENTSTTER
VFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKR
NT seq 2304 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgttctgcttctgcttcttcttcacccaccaccgccgccgcc
gctcctatgaaaaagcaaaagcccctttcctcccactccgactccgactccgccgccgcc
gcactcatgcccctcgacgacgatctcaaaccctccaacgccgttggtctcatggccgcc
aatctcgcccgcaagaaagctacccctcctcaaccccccaaaaaactcctcatcaagctc
cacaaagctaaaccaacattgccgacgaatttcgaggaggatacatgggcaaagctgaag
tcagctatttgtgcaatatttttgaagcagccggactcttgtgacttggagaagctttat
caggctgtgagtgatctctgcctttataaaatgggtggaaatctttatcaacggattgaa
aaggagtgtgaagtgcacatatctgcagcgctgcagtctttggtcggacaaagccccgat
ttggttgtttttctatctctagttgagagatgttggcaggacctttgtgatcaaatgttg
atgattcgtggtatagccttgtatctggacaggacgtacgtgaagcaaacagcaaatgtt
cggtcattatgggacatgggcttacaacttttccgtaaacatctttcgttgtctcctgaa
gtgcagcacaaaactgttactggtcttctaagaatgattgaaagtgaaagattaggtgaa
gctgtggatagaactcttctaaaccatcttttgaagatgtttactgctctaggaatttat
gcagaaagctttgagaagccattccttgaatgcacatctgaattttatgctgcggaaggt
atgaaatacatgcagcaatcagatgttccagattacttgaagcatgtggagactaggttg
caagaggaacatgatagatgtttgatctacttggatgcaagtactaggaagccattgata
gcaacagcagaaaaacaacttcttgaacgtcatatacctgccattcttgataagggtttc
tctatgcttatggatgggaatcgcattgaagaccttcagagaatttactcactcttttca
agggtcaatgcccttgagtcactgaggcaggccattagttcatacatcaggaaaactggg
cagggcgttgttatggatgatgagaaagataaagatatggtttcttcccttctggaattt
aaggcttctcttgacacgatatgggaagaaagctttttcaagaatgaagctttctgtaac
accattaaagatgcatttgagcatcttatcaatctccggcagaaccgacctgcggagttg
attgccaagtttttggatgagaagcttcgtgcgggtaataagggaacttcagaagaggaa
ttagagggcacacttgataaagttctggtgttattcaggttcattcagggcaaggatgtg
tttgaggcattttataagaaagatcttgctaaaagactgctgctaggaaagagtgcttct
attgacgcggagaaatctatgatctccaagttgaagaccgagtgtggcagccagttcaca
aacaaactggaaggaatgtttaaggacattgaattatcaaaagaaataaatgagtccttc
aaacagtcctcccaggcgagaacaaaacttccatcagggattgaaatgagtgttcatgtc
ttgacaactgggtactggccaacatatccacccatggatgttagacttcctcatgaattg
aacgtttaccaggatatttttaaagagttctatctaagcaaatacagtggaaggcgtcta
atgtggcaaaattcgttaggtcactgtgtcctgaaggcagattttcccaaagggaaaaag
gagttggctgtctccctgtttcagactgttgttctgatgctattcaatgatgccgagaaa
cttagctttcaagatatcaaggactctactagtattgaggacaaggaactgagaagaact
ctgcaatcacttgcctgtggaaaagttcgtgttcttcaaaagacgccaaagggtagagat
gtggaggatgatgattcatttgattttaatgacgggtttactgctcctctttaccggata
aaggtgaatgcaattcagttgaaggagaccgtggaggaaaatacaagcaccactgagaga
gttttccaagaccgtcaatatcaggttgatgctgctattgtgaggataatgaagactagg
aaagtgcttagtcacacacttcttattactgaactcttccaacagctcaagttcccaata
aaaccagctgatttgaaaaaaagg

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