Lactobacillus jensenii: BUE77_05665
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Entry
BUE77_05665 CDS
T04677
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lje
Lactobacillus jensenii
Pathway
lje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BUE77_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lje03019
]
BUE77_05665
Messenger RNA biogenesis [BR:
lje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BUE77_05665
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
APT14925
UniProt:
A0A5N1IB50
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All DBs
Position
complement(1167579..1169318)
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AA seq
579 aa
AA seq
DB search
MADFDIKIMVVSGVREQGKDMFAVQVNDEIFVLDAGLKYPDSSLFGIDVVIPDMEFFDKY
SDKIAGIFLTHGHADSIGALPYILRGHDIDIFGSELTIELAKLEVQRENHRRKNHLFHVI
DAETEIDFRNASVSFFHTTHSIPDSLGIVVHTPAGGIVYTGDFKFDPSASEHYRTDMDRL
AEIATKGVLALLSDSSNAEADFPNASEKEIGDYVSEVFSNAPGRIIVAAKASNFTRLQQV
FDAAKKNNRKVLLTGRGVNKIVQIALKLGYLQADSRLFIHSKELKNYKDDQLVVLETGRM
GEPLQSLQKMATNRHRMVSIHPGDLVFIATTPSHAVETMVAQTSDMVYRAGGTVTQLAYA
KHTSGHATGRDLQLLISTLKPKFLIPVIGEYRLLEIHRNLAIATGMKTKDIYITKNGDCL
SLQKGRFYLTDPVPGEDTMIDGSGIGDVGNIVLRDREILSDDGIFIAVATIDRKKKKIIA
EPRVSSRGFVYIKANKELMNESREVIKKAILTNFEHKKFDWSELKTDVRNSLEKFLYKQT
NRRPVVLPVIMEVNQNRHRAMARKKSEHELRNKKAENND
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgatataaagattatggttgtcagcggtgtccgtgaacaaggaaaggac
atgttcgctgttcaagttaatgatgaaatttttgttcttgatgcagggttaaaatatcct
gatagttctttatttggaattgatgttgtgattccagatatggaattttttgacaaatat
agtgataaaattgcgggaatctttttgactcatggtcatgcagattcaattggtgctttg
ccatatatcttaagagggcatgatatagatatttttggctctgaattaacaattgaatta
gcaaagttggaagtgcaacgtgaaaatcatcgtcgaaagaatcatcttttccacgtgatt
gatgcggaaacagaaattgattttagaaatgctagcgtttcattctttcacaccacccac
tcaattccagattcattaggaattgttgtccatacaccagcaggtggaattgtttatact
ggtgattttaaatttgatccttctgctagtgagcattatcggacagatatggatcgatta
gccgaaattgctactaaaggtgttttggcgcttttaagtgattcttctaatgctgaagca
gattttcctaatgcttcagaaaaagaaattggcgattacgttagtgaagtgttttctaat
gctccaggtagaattattgttgcagctaaagcttccaactttacaagattgcaacaagtc
tttgatgcagcaaagaagaataatagaaaagtcttgttaacaggtcgaggagtaaataag
attgtccaaattgctttaaagcttggctatttacaagctgactctagactttttattcat
tctaaagaattgaagaattataaagatgatcagttggtagtattagagactggtagaatg
ggtgaaccattgcagtcacttcaaaaaatggcaactaaccgtcatagaatggtttctatt
cacccaggggacttagtatttattgctactacgccttcacatgcggtagaaacaatggtt
gctcaaactagtgatatggtttatcgcgctggtggtactgtaacgcaattagcttatgct
aagcacactagtggtcacgccactggtagagatttacaactacttatttcaacattaaag
cctaagtttttaattcctgtaattggtgaatatcgcttacttgaaattcatcgcaacttg
gctatagcgacaggaatgaaaactaaagatatttatataactaaaaatggtgattgctta
agcttacaaaaaggtcgcttttacttaactgatccagttcctggtgaagatacaatgatt
gacggtagtggtattggtgatgtaggaaatattgttttgcgtgatagagaaattttatct
gatgatggaatttttattgcagttgctactattgaccgtaaaaagaaaaagattattgct
gaacctagggtaagtagtcgtggtttcgtttatattaaggctaacaaagaattaatgaat
gaatcgcgtgaagttatcaaaaaagcaatactaactaattttgaacataaaaagtttgac
tggtctgaattaaaaacggacgtacgtaacagtttggagaagtttttatacaagcaaact
aaccggcggccagttgttttgccagtgattatggaagtaaatcaaaatagacatcgggca
atggctcgaaagaaatccgaacacgaacttagaaataaaaaggcagaaaataatgactaa
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