Lactobacillus johnsonii FI9785: FI9785_1213
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Entry
FI9785_1213 CDS
T01120
Name
(GenBank) metallo-beta-lactamase superfamily protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FI9785_1213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljf03019
]
FI9785_1213
Messenger RNA biogenesis [BR:
ljf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FI9785_1213
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
ODP
Motif
Other DBs
NCBI-ProteinID:
CAX67074
UniProt:
D0R4R1
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Position
1139513..1141192
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AA seq
559 aa
AA seq
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MKLKNNEVGVYAIGGLGEIGRNMYCVEYQDEIIIMDCGIKFPEDDMMGINYVISDYSYLV
KNRKKIKALVVTHGHEDHIGGIPYLLKKIPEIPVYATPFALALIRGKLDEHGILNSSELH
EEHEDTVLKFDKLSVSFFRTTHSIPDTLGIAVHTPEGAVLFTGDFKFDLTPVMNQPAPDF
QEMAKLGKEGVLALLSDSTNAEVPTFTKSERFVAHSLHDIITGIKGRIIFATFASNLYRV
STAIKAAVDTGRKVAIFGRSMENGVQNGIDLGYLDIPEGTLVDANEINHTPPEKAMILCT
GSQGEPLAALSRIADGTHRQISLQPGDTVIFSSNPIPGNTISVNHLINKLTEAGANVVHG
KIHNVHTSGHAGQEEQKMMIELTKPEYFIPVHGEYRMQVVHTETAQSTGMPKDHTFVLKN
GDVLALTRDSSRIAGHINIPDVFVDTSGSDDVGNIVVRDRQILAEEGLVVVVATVDYKHQ
RVLAGPDILSRGFVYMRESTELISQAQKHVYHVLKTEMAKDPQPKENEIRKAIIENLQDF
LYSKTERRPMILPMLIEKK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattaaagaataacgaagtcggcgtttacgctatagggggtctaggcgaaatcggc
cgtaatatgtactgcgttgagtaccaagatgaaattatcatcatggactgcggtatcaaa
ttccctgaagacgatatgatgggaattaattatgttatctcagactattcctacttagtt
aagaataggaaaaaaattaaagcattagttgttacgcacggacatgaagaccatatcggg
ggaattccttaccttttaaagaaaattcctgaaattcctgtctatgctactccatttgct
ttagccttaattcgaggaaaacttgatgaacatggaattttaaactctagtgaacttcat
gaagaacatgaagatactgttttaaaattcgataaattatcagtaagtttcttcagaacc
actcactcaattccagatactctaggaattgcagttcatactcctgaaggagccgttcta
tttactggagactttaaatttgacttaactccagttatgaatcaaccagctcctgatttc
caagagatggctaagcttggaaaagagggcgtcttagcccttttatctgactccactaat
gcagaggttcctacatttacaaagtcagaaagatttgttgctcattcattacacgatatc
attactggaattaaaggcagaattatttttgccacttttgcttccaatctttaccgtgta
tcaactgcgatcaaagccgctgttgataccggaagaaaagtagctatctttggtcgttca
atggaaaatggggttcaaaatggtattgatcttggctacttagatattcctgaaggaacc
ttagttgatgctaatgaaattaaccatactccaccagaaaaggcaatgatcttatgtact
ggttctcaaggtgaacctcttgctgctctttcgagaattgcagatggaactcaccgtcag
atttcattacaaccaggcgacaccgtcatcttttcttccaatccaattccaggtaacact
attagcgttaaccacctaattaataagttaactgaagctggtgcgaatgttgttcacggc
aagattcacaatgtccacacttctggacatgctggccaagaagaacaaaaaatgatgatt
gagttaactaaacctgaatacttcattccagttcatggtgaatatagaatgcaagtagtt
catactgaaactgctcaatctactggtatgcctaaagatcatacttttgttcttaaaaat
ggggatgtccttgctttgacgagagattcttctagaattgctggtcacattaatatacca
gatgtctttgttgatacttctggtagcgatgatgttggtaatatcgttgttcgtgaccgt
caaatcttagctgaagaaggtcttgtagtagtagtagcaactgttgactacaagcaccaa
cgcgttcttgcagggccagacattttgagtcgtggttttgtctacatgcgtgaatcaaca
gaattgattagtcaagctcagaaacatgtctaccatgttcttaagacagaaatggcgaaa
gatccacaaccgaaagaaaatgaaattagaaaggcaattattgagaatcttcaagatttc
ctatattcaaagactgaaagaagaccaatgattctgccaatgctaattgaaaagaaataa
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