Lactobacillus johnsonii FI9785: FI9785_1215
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Entry
FI9785_1215 CDS
T01120
Name
(GenBank) ATP-dependent RecD/TraA family DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FI9785_1215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljf03400
]
FI9785_1215
Enzymes [BR:
ljf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FI9785_1215
DNA repair and recombination proteins [BR:
ljf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FI9785_1215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
UvrD_C
UvrD-helicase
RsgA_GTPase
AAA_22
T2SSE
NTPase_1
DEAD
MCM4_WHD
AAA_29
AAA_5
AAA_28
NPHP3_N
DUF1002
Motif
Other DBs
NCBI-ProteinID:
CAX67076
UniProt:
D0R4R3
LinkDB
All DBs
Position
complement(1142215..1144590)
Genome browser
AA seq
791 aa
AA seq
DB search
MAETSFTGRINGIVFENNQDLFKIIDVDLISKLPDYDRDNIRVTGNFGDIQIGSTYKFTG
NIVVHEKFGKQFRISSYEPVLPHEEGSLAKYLSSDKFPGIGKRAAEKIIDSLGTNALDLI
KSNPTEIDNLDLTQKQKDSLLSGINQMDSFSEIVIKLARYGINKKVAGNIYKVYHGDSLK
KLEEDPYQALGEVRGFGFKTADNMGRLLGIELNDPRRVRGALLSILQTALNTLGDTYVAL
DELLTQAYDLVQSTSYDELANSVNELQRQGKVVVSGDKAALQTIFQTELDIATELKHVVN
NQVEKEEFDDSDIEKAIKHVEETLEIEYDDTQKNAIKNALNNPISILTGGPGTGKTTIIN
GILMCLKELAEIPSAALYSDDPPFLLAAPTGRAAKRMSEVTDISAKTIHRLLGLGIGEND
ATDVNELNGEILIIDEMSMVDMFLFKQLLSGINSTKRIVFVGDKDQLPSVGAGNVFSDLI
SSGAFPTTRLQVIHRQGEDSSIIKLAHAINDEEAEETIFNKTKNYSFIPCQPSLVGDAID
QIVNLAIKRGFKKDDVQVLGAMYNGQGGITHLNDILQDVMNPLSAKTKVIEAHNESFRIG
DRILQLQNNPEKDIYNGQIGKIIGLNPDDKAKILIADFDGREIEFGIKDLNDITRAYAIT
IHKSQGSEFPLVILNLTMQNYMMLRRNLLYTAITRAEKNLVMVGEKKAYIMALRTPGNDR
KTELAAKIRHELGLKEVENTSNVNAEQEKTKTEVKEENVEPEDYVLTPELIYSGQIDPMI
GMEDIKLEEKR
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaactagttttactggacgaataaatggaattgtttttgaaaacaatcaagat
cttttcaagattattgatgtagatttaatcagtaaattacctgattacgatcgtgataat
atccgagtaactggaaattttggggatattcaaattggatcaacctataaatttaccggt
aatattgttgtacacgaaaaatttggtaaacaatttcgtataagttcttatgaaccagtt
ttgcctcatgaagagggtagtttagctaaataccttagttctgataagtttcctggaatt
ggtaagagggctgctgaaaagatcattgatagtttaggaacaaatgctttagatctgatt
aagtcgaatccaaccgaaattgacaatcttgatttaactcaaaagcaaaaggatagctta
ttatctggaatcaatcaaatggattctttttcagagattgtaattaagctggctagatat
gggattaacaaaaaagtagctggtaatatttataaagtatatcatggtgattccttgaag
aaattggaggaagacccttaccaagctctgggtgaagttcgtggctttggttttaaaact
gcagataatatgggacggctactaggaattgaactaaatgatcctaggagagttagagga
gcacttctaagtattttacagactgcgcttaataccttgggagatacttatgttgcactt
gatgaattattaacacaagcttatgatttagttcaatctacctcttatgatgagcttgct
aatagtgttaatgaacttcaaaggcaaggaaaagttgttgtttcaggtgataaggcagct
ttgcagacaatttttcaaactgaacttgatatagcaactgaattaaaacatgtagttaat
aatcaagtcgaaaaagaagaatttgatgatagcgatattgaaaaagcaataaaacatgtc
gaagaaacacttgaaatcgaatatgatgatactcaaaaaaatgcaattaaaaacgcgcta
aataatccaatttcgattcttacgggtggtcctggtactggtaaaacgacaattatcaat
ggaattttaatgtgtttaaaggaacttgcggaaattccaagtgcagctttgtatagcgat
gatccaccatttttacttgctgcaccaacgggtcgagcagccaaacgaatgagcgaggtt
acagatatttcagcaaaaaccattcaccgtttattagggttaggcattggtgaaaatgat
gcaactgatgtaaacgaattaaatggtgagattttaataattgatgaaatgtcgatggtt
gatatgtttctctttaaacagcttttatccggtattaattcaacaaagaggatagttttt
gttggggacaaagaccagctcccttcagttggagcggggaatgtttttagtgatttgata
agttcaggagcctttcccacgacacgattgcaagtgattcatagacagggagaagattcc
tcgattattaagttggcccatgcaattaatgatgaagaagcagaagagactatttttaat
aaaactaaaaactattcctttattccatgtcaaccaagcttggtgggggatgcaatcgat
caaatcgtaaatttggctattaaacgtggtttcaaaaaggatgatgttcaagttctggga
gcaatgtacaacggtcaaggtggaattactcacttgaatgatattttgcaggatgtgatg
aatccactatcagcaaaaactaaagtaattgaagctcacaatgaaagttttagaatcggg
gaccgaattctacaattacaaaataatccagaaaaagatatttataatggtcaaattggt
aaaattattggccttaatcctgatgataaggccaaaatattaattgctgattttgatggt
cgtgaaatagaatttggtattaaagacttaaatgatattacccgtgcgtatgccattacc
atccataagtcccaaggatcagaatttccgttagtaattttaaaccttacgatgcaaaat
tatatgatgttgaggcggaatttgttatatactgccattactcgtgccgaaaaaaaccta
gttatggtaggagaaaaaaaggcatatattatggcattgcgtactccaggtaatgaccgt
aagactgagttagcagctaaaattaggcatgagttaggtttaaaagaagttgaaaatact
tcaaatgtaaatgcggaacaagaaaaaactaaaactgaagttaaagaggaaaatgttgag
ccagaagattatgttttgactcctgagctaatttattctggacagattgatccaatgatt
ggaatggaagatattaaattagaagaaaaaagatag
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