Lactobacillus johnsonii FI9785: FI9785_333
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Entry
FI9785_333 CDS
T01120
Symbol
ydbR
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FI9785_333 (ydbR)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljf03019
]
FI9785_333 (ydbR)
03009 Ribosome biogenesis [BR:
ljf03009
]
FI9785_333 (ydbR)
Enzymes [BR:
ljf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FI9785_333 (ydbR)
Messenger RNA biogenesis [BR:
ljf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FI9785_333 (ydbR)
Ribosome biogenesis [BR:
ljf03009
]
Prokaryotic type
rRNA helicases
FI9785_333 (ydbR)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAX66216
UniProt:
D0R2M1
LinkDB
All DBs
Position
282748..284202
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AA seq
484 aa
AA seq
DB search
MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP
AILVGTPGRLLDHLKRGTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLF
SATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD
LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHK
KMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALLKDL
SKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSARKGGRKHDFVI
KKKD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttctgaaatgaacttaaaacctgaaattttaaaagctattaagcgttcaggt
tttgaagaagctacaccaattcaagaaaaaaccattcccctagttttggagggaaaagat
gtaattggtcaagcccagacagggactggtaaaactgctgcttttggtttgccaatttta
caaaacttagataagcaacacgattcaattcaagctattattattgaacctacccgtgaa
ttggctattcaaacccaagaagagttgttccgtttaggtcgtgatgaaaaagctcgcgtt
caagtagtttatggtggtgctgatattagacgtcagattcgtgctttaaagcaaacacca
gcaattttggtaggaacacctggacgtttgcttgatcatttaaaacgtggcaccattgat
atttctaaaatcaaaacaattgttttagatgaagcagatgaaatgcttgatatgggattt
attcaagatattgaaagtattttgaaatatgcatcaagtaaacatcaaacattacttttc
tctgctacaatgccaaagccaattttaagaattggtgaaaaattcatgaatgatcctgag
attgtaaaaatcaaaggaaaagaattaactgctaatttaattgatcagtattttgtgaga
gcaaaagaaaatgaaaagttcgacatcctatgtcgcttaattgacgttcaaaatcctgat
ttagctgttatttttggtagaactaagagacgtgttgatgaattaacacgtgggctacaa
gcacgtggatataacgctgctggaattcatggtgatctttctcaagctaagcgaatgagc
gtgttaaagagattccgtaaaggtaagctagatattttagttgcaactgatgtggcagct
cgtggattagatatttctggggtaagtcatgtttataactatgatattccgcaggatcca
gattcttatgttcaccgtattggtagaactggacgtgctggccagaacggaatgtctgta
acttttgttactccaaatgaaattggctatatgcgtactatagaacaattaacgcataaa
aagatgatgccacttaagccaccaactgatgaagaagcatttaaaggtcagctaagtgca
gctaataaaaaagtagcagaattgcttgatagcgatctttctaaatatactgaagaagca
tctcaacttcttgacgattattctgcgattgatttagtggccgctttattgaaggacttg
tctaaagatgcagatagtgtaaaagtaaaaattacacctgaaaagccattaccatttaaa
tcaaagcatggtaataatcgaaactttaaacgtaatttcaaacgtggtggagatcgaaat
gaacgatatcatcgtaagcctagtgcccgtaaaggtggtagaaagcatgatttcgttata
aagaaaaaagattaa
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