Lactobacillus johnsonii FI9785: FI9785_339
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Entry
FI9785_339 CDS
T01120
Symbol
trcF
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FI9785_339 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljf03400
]
FI9785_339 (trcF)
Enzymes [BR:
ljf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FI9785_339 (trcF)
DNA repair and recombination proteins [BR:
ljf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FI9785_339 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
UB2H
CdvA
adh_short
IstB_IS21
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAX66222
UniProt:
D0R2N6
LinkDB
All DBs
Position
288372..291869
Genome browser
AA seq
1165 aa
AA seq
DB search
MNITELIKKDKELNNFIEKAPVEKRSLLTGVNSGAFAAVLMQMLKAWQQTLILVEDNEEK
AQTLLDELGNLLPDDMVFGFPVDATIATQTAIASPDELSQRLQTLEFLAEKRAGIVVVTP
QALQYKLSDPRDFTKAKKIFKPEAEFDLDKLTEWLTQAGYRRESIVARPGEFARRGDILD
IYPLDQENPIRIELFGDEVDTVKEFDSATQRSLEEKDSISIGPALDRVFSPHNFQEAVEK
IKQDMSESTAEEESVKNHFVKAIDLLEAGGLPDNYAFLIDYLLPRSFNLIDYLDKDGLLL
FDDWQSIKKNVADVDAQNEAFISEEIKAGAMLNSQKLRHSFERVVQKSKQAQMLFSLFQK
GMGRLKFDQILNFTTREVQQFFSQMPLIKSELTRFSNEENTVILQADSETRAKQIAQNLV
DYGVDIPVVKADQLLSNKAQITVGNFAHGFALPSLDLVYLTERELFNQRPHHRKRVKTLE
NAQRLRNYNELKPGDYVVHVNHGIGRFEGIKTLDVDGKKRDYITITYQHHDQLFVPADQL
GLVQKYVASEGRVPHINKLGSSEWTKTKKRVQSKVEDIADDLIELYAKRESEKGFAFSPD
DDLQKEFEDAFPYPETPDQLRSIREIKADMESTKPMDRLLVGDVGFGKTEVALRAAFKAI
RDGKQVAFLAPTTILAQQHFETMQDRFKDFPVNCALLSRFQTPTEVKEIVEGVKSGKIDM
VVGTHRLLSKDVQFKDLGLLIIDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPTNRYPIQTYVMEEMPSIVREAVLREMKRNGQVFFLHNRIDDIDKIV
SQLEELIPEAKIEYIHGRMSENQMEDIMYRFSKNEFDILVTTTIIETGVDMPNVNTMIVE
DADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEIGEKRLSAIRDFTELGSGFKIA
MRDLSIRGAGNMLGKQQHGFIDSVGYDLYAQMLDEAIKKRKGKKVAVKSNAEVQFDLEAY
IPDDYIADQEQKIEFYKKIKGINDQKEADNIADELIDRFGDYPLAVENLLNVSTVKADAD
LAQVVSLTQKSNDKLQVIFNNQASEELEGPNIFKALEHVSLRARINMDPQKRLNVMLELE
KNMSTRQLFNELHTFLETASEIVQK
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgaacattacagagttaataaaaaaagataaagagttaaataattttattgaaaaagct
ccagtagaaaaaagatcacttttaactggagtaaattcaggtgcttttgctgctgtactg
atgcaaatgttaaaagcttggcagcagacattgattttagttgaagataatgaagagaag
gcgcagacgcttttagatgaattaggaaacttattgcctgatgatatggtatttggcttc
ccagttgatgctacaattgctactcaaacggctattgcatctccagacgaacttagtcaa
agattacagaccttagagtttttagctgaaaagagagcggggattgttgtagtaacgccc
caagctttacagtataagttgagtgatccgagagattttactaaggcaaaaaagatattt
aagcctgaggcagaattcgacttagataagttaactgaatggcttacgcaggcaggatat
cgcagagaaagcattgtagcccgtcctggagaatttgctcgtcgaggagatattcttgat
atttatcctttggatcaagagaatccgattcgaattgaattatttggggatgaagttgat
accgtaaaggagtttgattcagctacacagcgtagtttagaagaaaaagacagtatttca
attggcccagctctagatcgagtattttcaccacataattttcaagaagcggtagaaaaa
ataaagcaggatatgagcgaatcaactgctgaagaagagagcgttaaaaatcattttgtt
aaggcaattgatttattagaagctggtggtttgccagataactatgcctttttgattgat
tatttacttccgcgatctttcaatttaattgattatttagataaagatggcttattacta
tttgatgattggcagtccataaaaaagaatgtagctgatgtggatgctcaaaatgaggct
tttatttccgaagaaataaaagccggagcaatgctgaatagtcaaaaattacgccatagt
tttgagcgagttgttcaaaaatcaaagcaagctcagatgttattctcgctttttcaaaaa
ggaatgggacgattaaaatttgatcaaattcttaactttaccacacgagaagttcaacag
ttctttagtcaaatgcccttgattaaaagtgagctaacacgcttttctaatgaagaaaat
acagttattttgcaagctgattcagaaactcgtgctaagcaaatcgctcaaaatttagtt
gattatggtgttgatattccggttgtaaaagcagatcaacttttatcaaataaagctcaa
ataactgtaggtaattttgcacatggttttgctttacctagtttagatttggtttattta
actgaacgagaattattcaatcaaagaccacatcaccgcaaacgtgttaaaactcttgaa
aatgctcaacggttaagaaactataatgaattaaagccaggcgattatgttgttcatgtc
aatcatggtattggacggtttgaaggaattaaaaccttagatgtagacggtaaaaaacgt
gactacatcactattacttatcaacatcatgatcagctatttgtgcctgctgaccaatta
ggtttagtacaaaaatatgtggcttctgaaggcagagttcctcatattaataaattggga
agttctgagtggactaagactaaaaaacgggttcagtcaaaagttgaagatatcgcagac
gatttgattgaactgtatgcaaaacgtgaatctgaaaaaggatttgctttcagtccggat
gatgatttacaaaaagaatttgaagatgcttttccatatcctgaaactccagatcagctt
cgttcaattagagaaattaaggctgatatggaaagtacgaagccaatggatcgactttta
gtgggagatgtaggctttggtaaaactgaagttgccttgagagctgcttttaaagcaatt
cgggatggaaaacaagttgcctttttagctccaactactattttggcgcaacaacatttt
gaaaccatgcaagaccgttttaaagattttccagtaaattgtgcgcttttatcacgtttt
caaactcctactgaagtgaaggagatagttgaaggtgtaaaaagtggcaagattgatatg
gttgttggaacacaccgcttgctctcaaaggatgtccaatttaaagacctaggcttgtta
attattgatgaagaacagcgatttggagttaagcataaggaaaggctaaaagaattaaaa
gccaatatagatgttttgactttgactgctactccaattcctcgtactttacatatgtcg
atggtaggagtacgagatctttcagttatggagacgccacctactaaccgttatccaatt
caaacttatgttatggaagaaatgccaagtattgttcgtgaggccgtccttagagaaatg
aagcgtaacgggcaagtatttttcttacataatcggattgatgatatcgataaaattgtt
agtcaattagaagaactgattccagaagccaaaattgaatatattcatggccgcatgagt
gaaaatcaaatggaagatattatgtatcgtttttcaaaaaacgaatttgatatcttggta
acaacaacaattattgaaactggcgttgatatgccaaatgttaatactatgattgttgaa
gatgcagatcattatggattaagtcagctatatcaattacgtggtcgaataggcagaagt
gcccgtttagcctatgcctatttcctttatcaaccaaataaagtcttaactgaaattggt
gaaaaacggcttagtgcaatccgcgactttactgaattaggatccggctttaaaattgct
atgcgtgatttatcaattagaggggccggtaatatgcttggaaaacagcagcatggcttc
attgatagtgttggttacgatttatatgcccaaatgttagacgaagcaattaagaaacgt
aaaggtaaaaaagttgcggttaaatctaatgcagaagttcaatttgatttggaagcatat
attcccgatgattatattgcagatcaagaacaaaaaattgaattctataagaaaattaag
gggatcaatgatcaaaaagaggcggacaatatcgcagatgaattaattgatcgctttggt
gattatccacttgctgtagaaaatcttttgaatgtatctacagttaaggcagatgcagat
ttagctcaagttgtatctcttactcaaaaatcaaatgataagttgcaagtcatttttaat
aatcaggctagtgaggaattagaaggaccaaatatttttaaggccctagaacacgtatct
ctaagagcacgaattaatatggatccgcaaaagagattgaacgtaatgcttgagcttgag
aaaaatatgagtactagacaattatttaatgagcttcatacattcttagaaacagctagt
gagattgttcaaaaataa
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