Lactobacillus johnsonii FI9785: FI9785_489
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Entry
FI9785_489 CDS
T01120
Symbol
rhe3
Name
(GenBank) ATP-dependent RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ljf
Lactobacillus johnsonii FI9785
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljf03019
]
FI9785_489 (rhe3)
03009 Ribosome biogenesis [BR:
ljf03009
]
FI9785_489 (rhe3)
Enzymes [BR:
ljf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FI9785_489 (rhe3)
Messenger RNA biogenesis [BR:
ljf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FI9785_489 (rhe3)
Ribosome biogenesis [BR:
ljf03009
]
Prokaryotic type
rRNA helicases
FI9785_489 (rhe3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_19
T4SS-DNA_transf
AAA_30
MGS
Motif
Other DBs
NCBI-ProteinID:
CAX66369
UniProt:
D0R2G3
LinkDB
All DBs
Position
425749..427134
Genome browser
AA seq
461 aa
AA seq
DB search
MAQTSSIFQNEKIRSELQAGLEKINFKKPTKVQSSVIPALLNKKNVVVQAATGSGKTHAY
LIPILNMIDENAPVTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQI
EKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLSQMDEIMSKLD
KKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILYK
LLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQY
VVASDLAARGIDVPGVNLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIE
DLEKLGIHFDFKDLRNGELVERTHYHRRDNRQTRNHKLDNRMIGMVKKTKKKVKPGYKKK
IKQAIQKDRQQKRKLEERHQIRKAKRKRKREREQARSNFDN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaacaagtagtatatttcaaaatgaaaaaatccggtcagaactacaagccgga
ttagaaaaaattaattttaagaaaccgactaaagtacagtcttcggttattccagcactt
ttaaataaaaagaatgttgtagtgcaagctgcaacgggatctggaaagactcatgcttat
ttgattccaattttgaatatgatcgatgagaacgcacctgtaacacaagcaattgttact
gcaccgagtcgtgaattggctaatcaattatataaagttgcgcgtcagttaagggatgct
agtggtttaaatatttcaattgaatatttaggcggtggaaatgaccgtaatcgccaaatt
gaaaaggctgaaagtagagctccacaattaattattgcaacccctggtcgtttacatgat
tttgcatctaaaaagtttattaacttggagaatgtaaaagcttttattatcgatgaagct
gatatgactttagatatgggctttttaagtcaaatggatgaaattatgtctaagttggac
aaaaaagcagtcttaggtgcattttcagccacgatccctgttaagctcgaaaacttttta
agaaagtacatgtcaaagccagaatttatcgttattgacaatccggcaattattgcgcca
acgattcaaaatgatttaattgacgtaggttcaagagacaagaaatcaattttgtataag
ttattaacaatgggacagccatatttagcccttgtttttgctaatacgaaaaagactgtt
gatgaattaacggactaccttgaagaacaaggccttaaagtggcaaaaattcatggtgga
attactgaacgcgaacgaaagagaattattcgtcaagttagagaaggacaatatcaatac
gtcgtagctagtgacttagctgctcgtggaattgatgtacccggtgttaacttagttgtt
aactatgaaattccaaaagacttagaatttgtaattcaccgaattggtcgaacaggcaga
aacgggcttgaaggacatgccattactttaatctatgatgatgaaatgagtcagattgag
gacttagaaaaattgggtattcattttgactttaaagatcttagaaatggtgaattagtt
gaaagaactcactatcacagaagagataatcgtcaaacgcgcaaccataaacttgataac
cgcatgattggtatggttaagaaaaccaagaaaaaagtaaagccaggctacaagaagaag
attaaacaggccattcaaaaagatcgtcagcaaaaacgtaagcttgaagaacgtcatcaa
attagaaaagcaaagcgtaaacgtaagcgtgaacgtgagcaagcacgtagtaattttgac
aactag
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