Lactobacillus johnsonii FI9785: FI9785_774
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Entry
FI9785_774 CDS
T01120
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ljf
Lactobacillus johnsonii FI9785
Pathway
ljf03030
DNA replication
ljf03430
Mismatch repair
ljf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FI9785_774 (polC)
03430 Mismatch repair
FI9785_774 (polC)
03440 Homologous recombination
FI9785_774 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljf03032
]
FI9785_774 (polC)
03400 DNA repair and recombination proteins [BR:
ljf03400
]
FI9785_774 (polC)
Enzymes [BR:
ljf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FI9785_774 (polC)
DNA replication proteins [BR:
ljf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FI9785_774 (polC)
DNA repair and recombination proteins [BR:
ljf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FI9785_774 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
DEDDh_C
Zn_ribbon_3
T2SSK
Auto_anti-p27
YhfH
Motif
Other DBs
NCBI-ProteinID:
CAX66648
UniProt:
D0R3I5
LinkDB
All DBs
Position
695626..699924
Genome browser
AA seq
1432 aa
AA seq
DB search
MTKKNELFKKLLDQIKFPDKFEDNDIVQNGEIENVDVYANERKWKIHVFFDTPLDFETYR
SLNELIYETFEPFVNVELLVQTRDGSSKKLPAYWTYAIQNSTNLKPAVREFLQGQAPHLE
KEKWLIPTQNQVVNGLLSEQVLAELNKEFRRYGFFNIKFTTKVDETNIDENLRSLEQEQA
QHESAMQEFYEKQPAEPKKKMPVKSTRMGNKKVDKKAKFIQIKDLEDGSGNVAIEGHIFN
TDIHELKSGSIIFTGEITDYTDSISFKKFVSDKDQIDYLKGIKPGVWARMQGYAADDQYQ
HDVVFNIRNLELIEHKGREEKYEGEKKRVELHLHTNMSQLDATSTASDFIKTAKKFGQKA
IAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHALLVLNPTEMDYRDREYVIFDV
ETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDEMVGAADDE
KDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLHPEQTR
HTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNERFHEADLGKMNDYAKYGQVY
KRAKPSHMSVLALNQEGLKNMYKLVSLASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQG
DVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKE
LNKPVVATSDAHYVEPHEAIYRKILLAAQKGNPNRNKNLPDLHFYSTQEMLDAFSFLGED
VAKEIVIDNTNKLADHIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVE
DRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLA
PHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTLLVKDGQDIPFATFLGFHGDKVPDI
DLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYGYVKHYEDENELHLRNAELD
RLAAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHDNI
LKFDILGHDDPTMIRMLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTPEQIQSKTGTLG
VPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCRD
NIMMDLIHWDVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDWYIPSCLKIKYMFPK
AHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGM
DVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILAPFNAVPGLGDN
AAKQIVAARAEQKFLSKEDLATRGKVSQTIMEYFENNGVLEGMPDQNQLSLF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaaaagaacgaacttttcaaaaaactattagatcaaatcaagtttcctgataag
tttgaagataacgatattgtccaaaatggtgaaattgaaaacgtggatgtatacgctaat
gaaagaaagtggaaaatccacgttttttttgatacaccattagattttgaaacttatcgc
tctcttaatgaacttatttatgagacttttgaaccatttgtgaatgttgaattattagtt
caaacacgcgatggaagtagtaaaaaactaccggcctactggacttatgccattcagaat
tcaactaacctaaaaccagctgttcgggaatttttacaaggacaagctcctcatttagaa
aaagaaaaatggctaattccaactcaaaaccaagtagtaaatggcttgctttcagaacaa
gttttagcagaactaaataaagaattcagacgctatggtttcttcaatattaagtttaca
acgaaagttgatgaaactaatattgatgaaaatttaagaagtctagaacaagagcaggct
cagcatgagtctgctatgcaagaattctatgaaaaacaaccggcagaacctaagaaaaaa
atgcctgttaagagcacaagaatgggcaacaaaaaggtcgataaaaaagctaaatttatt
caaattaaagacttggaagatggcagtggaaacgtagctattgaaggccatatttttaat
actgatattcatgaattaaaatctggaagtataatttttactggtgagattactgactat
acagattcaattagctttaaaaaatttgtttctgacaaagatcaaattgattatctaaag
ggaattaaacctggtgtttgggctagaatgcaaggttatgcagctgatgatcaatatcaa
catgacgttgtttttaatattcgaaacctagaattaattgaacataagggtcgagaagaa
aagtatgaaggagagaaaaagcgtgtagaattgcatcttcatacaaatatgagtcaattg
gacgcaactagtacggctagtgactttatcaaaactgccaaaaaatttggtcaaaaggca
attgcaattacggatcatgcagatgtgcaatctttcccagaagcttatcatactggtgca
agcgaaaaaatgaaaattttatatggctatgaggccaatatgattgatgatcatgctttg
cttgtccttaatcctactgaaatggattatcgagatcgtgaatatgtgattttcgacgtt
gaaacaacaggactatcttctgtttacgacaccattattgaaatcggtgcggtaaaaatg
aaaaatggagaagtactggaaagattcgatgagtttatcaatccccaccatcccttaagt
gatacaacgattaacttaacatcaattactgatgaaatggttggtgcagctgatgatgaa
aaagatgtaattaagaaatttaaagaattttatggtgatcgtcctctctgtggacataat
gttcaatttgatgttgggtttgtaaatgcggctttacgccgtgcaggtctagaagaaatt
acgcaacctgttgttgacacgcttgaagtttcaagacttttgcatcctgaacaaactcgc
cacactcttgattctttagctaagaaatacaatgttgttcttgaacatcaccaccgcgct
aatcaagatgccgaagctacaggatatttaatgtttaaattgctagatgcttttaatgaa
cgttttcatgaagcagatttaggcaaaatgaatgactatgctaaatatgggcaagtttat
aagcgagctaagccaagtcatatgagtgttcttgctctaaatcaagaagggctaaaaaat
atgtacaagcttgtatcgcttgcaagtactaaatatttctatcgtattccacgtacccca
aagtcggaattaagaaaatatcataaaggtttattatttggtagtgggtgctggcaaggc
gatgtattcatttcaatgatgcaaaaaggatatgatgaagctcgtgaaaaagcacgtttt
tatgattatcttgaagtccaaccgccagcagcttatcaaaccttaattgaagatgatcta
attaaagatgaagacgagctgcatgaaattattcaaaatatttataaattaggtaaagag
ctaaataaaccagtcgtagctactagtgacgcgcactatgttgaaccgcatgaagcaatt
tatcgtaaaattttattagcggctcaaaagggaaatcctaatcgcaataagaatttaccg
gatttacatttttattcaacgcaggaaatgcttgatgcatttagctttttgggtgaagat
gtagctaaagaaattgtaattgataataccaataaattagccgatcatattgaggaaatt
gctccgattaaaagtggactatatccaccgcatattgaaaatgcggatcaagaaatgaag
gatttaacctataataaagcttacgaattatacggaaaacctttaccaaagattgtagaa
gatagaattgagcttgaattgaattctattatttcaaacggatatgcagttatttactta
atttctcaaaggcttgttgccaaatcaaataaagacggatatttagtagggtcacgtggg
tcagttggttctagtttagtagcgacgatgtctggaattactgaagtaaatcctttggct
cctcactatcgttgtccgaattgtaagtattctaaattctttgagaatggagaatatggg
tcaggctatgatttacctgacaaagagtgtccaaaatgtggaactctattagttaaagat
gggcaagatattccgtttgctactttcttaggattccatggagacaaggtgccggatatc
gatttaaacttctctggagactatcaaccagtagctcataactacattcgagttatgttt
ggtccagacaattcatttagagcggggacgattgcgaccgttgctgataagactgcttat
gggtatgttaagcattatgaagatgaaaatgaactacatttaagaaatgccgagcttgat
cgtctagcagccggtgcttctggagtaaaaagaacaactggacaacacccagcaggtatt
gttgtagtacccgatgacatggatatttatgactttactccagtccaatatccagcagat
gatttaagtgcagcttggcttacaactcactttgatttccattctatccatgataatatt
ttgaaatttgatattctgggtcacgatgatcctaccatgatcagaatgctacaggatcta
tccggagttgatccgttaactattcctcctgatgatccgggagtaatgtctctcttctca
agtcctgaaattttaggtgttacccctgaacaaatccaatcaaaaacgggaacacttggt
gtaccagaattcggtacaaagtttgttagagggatgcttgaagaaacaaaaccaactact
ttctcagaattattgcaaatttcaggtttatctcacggtactgatgtatggttaggaaat
gcagaagacttaattaataatgggacttgtaagttgaagaatgtaattggttgtcgtgac
aatatcatgatggacttgattcactgggatgtaaaaccagaagttgctttctttacaatg
gaatctgtacgacatggtagaggaattagcgatgaaaatatggaaatcttgaaaaagaac
gataagattcctgattggtacattccttcatgtcttaagattaagtatatgttccctaaa
gcccatgctacagcctatatcctgatggcacttagaattgcttggtttaaagtatattat
ccagtaatttattatgcttcttacttctctgttcgtgctgatttgtttgatttggtagca
atgagtcacggcaagaatacagttaaagctgcaatgaaagaaattcaggataagggaatg
gatgtttctgcaaaagataagtcattacttactgtacttgaaattgcgaatgaatgttta
gagcgtggaataaagattaagatggtagatgtaaacgaatctgaagccacagactttaag
attattgatgaccatacaattttagcaccatttaatgctgttcctgggttaggtgacaat
gctgcaaagcaaattgtagctgcacgtgcggaacagaaatttctttcaaaagaagatctt
gccactcgcggcaaagtatcacaaacaattatggagtattttgaaaataatggtgttctt
gaaggaatgcctgatcagaatcaattgtcactattttag
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integrated database retrieval system
