Lactobacillus johnsonii DPC 6026: LJP_0403
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Entry
LJP_0403 CDS
T01960
Name
(GenBank) DNA polymerase III subunit gamma/tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
ljh
Lactobacillus johnsonii DPC 6026
Pathway
ljh03030
DNA replication
ljh03430
Mismatch repair
ljh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJP_0403
03430 Mismatch repair
LJP_0403
03440 Homologous recombination
LJP_0403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljh03032
]
LJP_0403
03400 DNA repair and recombination proteins [BR:
ljh03400
]
LJP_0403
Enzymes [BR:
ljh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LJP_0403
DNA replication proteins [BR:
ljh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LJP_0403
DNA repair and recombination proteins [BR:
ljh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LJP_0403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
TIP49
RuvB_N
AAA_22
DNA_pol3_gamma3
AAA_24
AAA_5
AAA_30
AAA_assoc_2
AAA_7
AAA_19
AAA_16
AAA_14
AAA_18
AAA_2
DRE2_N
Rep_fac_C
Sigma54_activat
RCF1-5-like_lid
Sigma54_activ_2
Viral_helicase1
Mg_chelatase
PIF1
Glyco_tranf_2_5
UfSP_MPN_N
Motif
Other DBs
NCBI-ProteinID:
AEB92737
LinkDB
All DBs
Position
446587..448395
Genome browser
AA seq
602 aa
AA seq
DB search
MAYQALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAK
ALNCTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYAPTQGKY
KVYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQ
HDLIARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRI
TGYAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTVKGMLAIKSNK
EETFLTENYASELAKIPEEKFYSLVQAANNALNDLRYTNQQQIPLDVFVVQVTQAPVKAD
NTPQQAEAISSDVVQTLKNQIDTLSKQVAELKNRPAPARSTTSDFSGTIKTETKSQIKRR
NEQENKPEQKPKRRKASSNNQAAQENNRRQVYHVLENATKEDLNTVKDIWPDLLSTLKVS
QRAVMEVLDPVAASHEQIVLKCKYELWFERANQDGDLISQLETEIAKLTKHNYSIVLVAD
SSWLKVRHDFVASHKEELLAKKFQRLEKSEQEANGNQIDPQAKKEVIDKAKELFGDLAQV
KD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcaagcgctatatcgtaaatggcgtccgcgaacttttgatggagtcgtagga
caaacagcgattactgatacattaaaaaatgcaatcaagcgtggcaagatatcacatgct
tttctattcgcaggaccacgtggtactggtaaaacatcatgtgctaaaatttttgccaag
gccttaaattgtactaatctgcaagacggagaaccatgtaatgaatgtgaaaactgtctt
gcagcagatcaaggaacaatgaatgatatcatcgaaatcgatgccgcatctaacaatggt
gttgatgaaattcgagatatcagagataaagtaaaatatgccccaacacagggtaaatat
aaagtctacatcatcgatgaggttcatatgctttcgatgggtgccttcaatgccttactt
aagacactagaagagccgccggagcatgtggtctttatcttagctacaacagagcttcaa
aaggttccagcaactattatttctagaactcagcgctacaacttcaagcgcattgatcaa
catgatttaatcgctcgcatgacctatattcttgaccaagaaaaaattgactttgaagaa
aaggcacttgaagtgattgctcaagtagctgatggtggaatgcgtgacagtttaagtatc
ttggatcagattttatcttatgatcaagataaggttaagtacgaagatgctttaagaata
actggttatgcggctcaagaaaaaattgaacaagtattattaaatttacttaatggcgaa
acttcagcagctcttgaaatagttcatgcacttttgcaggacggagcatcaactaagaat
attttagatgagttgattagtttaactgttaaagggatgctggcaattaagagtaataag
gaagaaacttttttaactgagaattatgcttccgaattagctaaaattccagaagaaaaa
ttctactcactcgtacaagcagctaacaacgccttaaatgacttgcgctacactaatcag
caacaaattcctttggatgtatttgtagttcaagtaactcaagctccagtaaaagctgat
aatacacctcaacaagctgaagcaatttcgtcagatgttgttcaaactctaaaaaatcaa
attgacactttaagtaagcaagttgcggaattgaaaaatagaccggcacctgctagaagt
actacctcagacttttctggcacaattaaaactgaaactaagtcgcaaattaagcggcgt
aatgaacaagaaaataagccagaacaaaagccgaaaagaagaaaagctagttctaataac
caagcggctcaagaaaataaccgccggcaggtatatcatgtgcttgaaaatgccactaag
gaagacctaaatacagtaaaagatatttggccagacttactgtctactctaaaagtatct
caaagagctgtaatggaagttttagatcctgtggctgcaagtcacgagcaaattgtttta
aaatgtaagtatgaattatggtttgagcgagcaaatcaagacggagatctaatttctcaa
cttgaaactgaaattgcgaagctaacgaagcataattatagtattgttttagttgcagat
tcttcatggttgaaagtacggcatgattttgtggcaagtcataaagaagagttacttgct
aaaaaatttcaaagactagaaaaatctgaacaagaagcaaatggtaatcagatagatcct
caagcaaaaaaagaagtcattgataaggctaaagaattgtttggcgatctagcacaagtt
aaagattaa
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