Lactobacillus johnsonii DPC 6026: LJP_0986c
Help
Entry
LJP_0986c CDS
T01960
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ljh
Lactobacillus johnsonii DPC 6026
Pathway
ljh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJP_0986c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljh03019
]
LJP_0986c
03400 DNA repair and recombination proteins [BR:
ljh03400
]
LJP_0986c
Enzymes [BR:
ljh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LJP_0986c
Messenger RNA biogenesis [BR:
ljh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJP_0986c
DNA repair and recombination proteins [BR:
ljh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LJP_0986c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Receptor_IA-2
Motif
Other DBs
NCBI-ProteinID:
AEB93312
LinkDB
All DBs
Position
complement(1061686..1063482)
Genome browser
AA seq
598 aa
AA seq
DB search
MKSSIEVLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTL
VISPLISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPERLAMD
YFRYQLNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPNILALTATATPSV
QKDIADQLNIPAENYVITSFARPNLSFKVVDNPKNTNLYLLDYIKKHPNQSGIVYASTRK
NVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRF
VIHANSTPNLESYYQEAGRAGRDGEPCEGILIYHPKDIRLYRWFIEQSDLDDEYQKIQYQ
KLAAITKYVNTTECLQQFIVRYFGQTCSPCGKCSNCLGTFIEKDITAESKKIISTIYELD
GRFGKNVVADVVTGANNQRMRELRASNFKNYGSLKLGKRAALDLINYLISHNYLELTDTQ
YPVVHVTNLGWDVLDDKKQVSQKISKNIRKSIQLTNQISEKENNLFLRLKETRLELAKEQ
GIPAFYIFSDKSLRDMALQKPKTKTDFLNISGVGQAKLKAYGQIMLDTIRKYLKEEID
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcaatagaagtactaaagaatgtttttggttatacaacttttcgtcctgga
caagagcgagttattgagcaagttcttaaaggaagaaatgttttagctgtaatgccaact
ggagcaggaaagtcaatgtgttatcagataccagcattggttaaccctggtgtaacgttg
gtaatatctcctttaatttccttaatgaaggatcagatagactctctaaaacaaaatggc
attaatgctgctgctttaaattcagcaactcctcaagaagaagtaaatccaatcttgaga
caagcctatgaaggaaaaataaaacttttatacataactcctgagcggctagcaatggat
tattttcgctatcaattaaactttttggatatttctttagttgcagtcgatgaagcccac
tgtatttctcaatggggccatgactttagacctgcgtaccgccaaattatggagggagta
aagtcaattaaaagccagcctaatattttagctttaacagcaactgcaacaccttcagtt
cagaaagatattgcagatcaattaaatattccggctgaaaattatgttattacttcattt
gcaagaccaaatttgagcttcaaggtagtagataatcctaaaaatactaacttatatctt
ttagattatattaaaaagcatcccaatcaatcagggattgtgtatgcgagtacaagaaaa
aatgttgaagagttgactgactatttagctcaaaatggaattttaacagcgagttatcat
gctgggctatctaataaagaaagagccgatgtacaagatgcctttcaatttgataaggtc
caggtgattgttgcaacaaatgcttttggtatgggaattgataaaagaaatgttcgattt
gtaattcacgctaatagtactccaaacttagaatcatattatcaagaagccgggagagca
ggcagagacggagagccatgtgaaggaatattaatttatcacccgaaagatattagacta
tatcgttggtttattgaacaatctgatttagatgatgaataccaaaaaattcaatatcag
aaattagctgcaattactaaatacgtcaatacaacggaatgtttacaacaatttatcgtc
agatattttggtcagacttgctctccatgtggcaaatgttctaattgcttgggaacattt
attgaaaaagatattactgcagaaagcaaaaaaatcatttcaacaatttatgaacttgat
ggacgttttggcaaaaatgtagttgccgatgtagttacaggtgccaataatcagcgcatg
cgagaacttcgggcatctaattttaaaaattatggtagtttgaagttaggaaagagagct
gctttagatttaattaattatctaatcagccataactacttggagttaacagatactcaa
tatcctgtagttcatgtaactaatttaggatgggacgttttagatgataaaaagcaagta
agtcaaaagatttcaaaaaatatcaggaaatcaatacaacttactaatcaaatttcagaa
aaggaaaataacctattcttgcgtttaaaggaaacacgcttagaattagctaaagagcag
gggataccggcattttatattttttcagataaatcattaagagatatggcacttcaaaaa
cctaaaacaaaaacagactttttgaatatttcaggtgttggtcaagcaaaactaaaagca
tatgggcaaattatgcttgataccattagaaaatatttgaaagaagaaatagattaa
DBGET
integrated database retrieval system
