Lactobacillus johnsonii DPC 6026: LJP_1393c
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Entry
LJP_1393c CDS
T01960
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ljh
Lactobacillus johnsonii DPC 6026
Pathway
ljh03030
DNA replication
ljh03410
Base excision repair
ljh03420
Nucleotide excision repair
ljh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJP_1393c
03410 Base excision repair
LJP_1393c
03420 Nucleotide excision repair
LJP_1393c
03440 Homologous recombination
LJP_1393c
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljh03032
]
LJP_1393c
03400 DNA repair and recombination proteins [BR:
ljh03400
]
LJP_1393c
Enzymes [BR:
ljh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LJP_1393c
DNA replication proteins [BR:
ljh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJP_1393c
DNA repair and recombination proteins [BR:
ljh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LJP_1393c
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJP_1393c
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
HHH_2
HHH_5
Polysacc_deac_2
Imm9
DUF61
Motif
Other DBs
NCBI-ProteinID:
AEB93715
LinkDB
All DBs
Position
complement(1493490..1496150)
Genome browser
AA seq
886 aa
AA seq
DB search
MAQKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIMKQTNPTNVL
VAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIG
TLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTPTE
FIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLINDKD
KAFLAKKLATIDRNSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGSTGTTSSEQ
EIEKYEYLELTKENIVELDKISEKEVTFYLAMLGDNYHLAPIEGFSLKVGNKIYVSKDPV
LLQENPLHKMLEDKTIKKNVFDIKRTYVGLHRLDLKAEGLDYDMLLASYLVNNENNSNDL
GEVAHLYDDYSVKTDLEVYGKGKKQAVPNDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQ
DDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNS
PKQLGHILFEKLGLPPIKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQIAKIQNTYVKG
LLDCIQPDGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFVPSTKDGYIFS
CDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNF
GIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRR
RYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHD
ELIFDVPKDELNTIKKIVPEVMQSAVKLDVPLIADSNWGHNWYDAK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaaagaaattacttttaattgacggcaactctgtggcctttcgtgccttttat
gctttataccgtcagcttgatcgttttactagtccagatggattgcatacaaatgcaatt
tttacttttaaaaatatgcttgacgcaatcatgaagcagactaatccaactaatgtatta
gttgcttttgatgcaggaaaagttacttttagaactgagatgtatcaagattataaaggt
ggtcgccaaaaaacaccgagtgaattatcagagcagcttcctgtaattcgtgaaatgctt
aaagacttaggaataaagagttatgagctaaagaattatgaagctgatgatattattgga
acactttctaagatgggagaagatgctgggtatacagttgatattgtgactggagataga
gatttaactcagcttgcatctgataaaactacagtattaattactaaaaatggagttggc
gatacagaagcatatactccagaccatatgaaagaagttaacggtgttactccaaccgaa
ttcattgatatgaaagctttgatgggggataattcagataattatcctggtgtaactaag
gttggccccaaaactgcctcccgtctaattcaaaaatatggttctattgaagaactttat
gaacatgtagacgaaatgaaaaagtctaagctaaaagagaatctaattaatgataaagat
aaggcctttttagctaaaaagttagccactattgatcgtaattcgccagtggaagtaact
ctggccgacactaaattacaagaaccaaatattgaagacttacgtaatttgtatgaacgt
ttaggatttaagaaattcttagcagaattaggtagcacgggtacgacgagtagtgaacaa
gagattgaaaaatatgaatatcttgaattaactaaggaaaatatcgttgaactagataaa
atcagtgaaaaagaagtaactttttatttagcaatgctaggtgataattatcatctagct
ccaattgaaggcttttctttaaaagttggtaataagatctatgtatctaaagatccagtt
ttgttgcaagaaaatccacttcataaaatgctagaagataagaccatcaagaaaaatgtt
tttgacattaaaagaacttatgtaggtttacatcgactagatctcaaggcagaaggttta
gactatgatatgcttcttgcttcatatttagttaataatgaaaataattcgaacgatctt
ggcgaagtagctcatttatacgacgattattctgtaaagactgatttagaagtttacgga
aaaggtaaaaaacaagctgtacctaacgataatgaattctttgaacatttagcagctaaa
gttgccgtaattgagaaattaaagactcaacttcttgaaaaactaaaagatcatgaacaa
gatgatttatatgaaacaattgaaatcccagtggctttcgtcttagcaaagatggaaatt
actggaatcaaggttgaagcatcagttttgaatcaattaggtaatgattttgcagttaaa
ttacaagaactagaacataagatttatcaacaagctggcgaagaattcaacttgaactca
cctaagcagttggggcatatcctatttgagaaattaggtttaccaccaattaagaagact
aagactggttactcaacatctgttgaagtattagaacaattaaaaatgaaaagtccaatt
gtttcagaaattttggactatcgccaaattgctaaaattcaaaacacttatgttaagggc
ttgcttgactgcattcagccagatggaagaattcacactcgctacttgcagactttgact
acaacaggtcgtctttcttcagttgatcctaatttacaaaatattccaactaaaactgag
gaaggaaagcagattagaaaagcttttgttccttcaacaaaagatgggtatattttctct
tgtgattattctcaggttgaactaagggtgttagcgcatgtttctggggatgaacatatg
caagaagcattcaagtcaggctatgatattcatgcccacactgcaatgaagattttccac
ttggactcacctgatgaagtaacgccattaatgcgtagacatgctaaagctgttaatttt
ggtatcgtttatggtatttcagactatggcttatccaaaaacttaggcattagccgtaag
caggctaaaacttttattgaaaattactttgaacaatatcctcaaattaaaaattatatg
gatgaagcaattaaaaaagctcgtgagaatggctatgcagaaacaattatgcatagaaga
cggtatttaccagatattcattccaagaacttcaatgtcagaagttttgcggaaagaact
gcaattaattctccaattcaaggatcagcagctgatattattaagattgccatgattaat
atgcagaaaaaacttgatgaactacatttaaagactaaaatggtcttacaagtacacgat
gaattgatttttgatgtgccaaaagatgaattaaatacaattaagaaaattgttccagag
gttatgcagtcagctgtcaaattagatgttccactaattgcagattcaaattggggacat
aattggtacgatgcaaaataa
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