Lactobacillus johnsonii N6.2: T285_01430
Help
Entry
T285_01430 CDS
T02941
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ljn
Lactobacillus johnsonii N6.2
Pathway
ljn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T285_01430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljn03019
]
T285_01430
03009 Ribosome biogenesis [BR:
ljn03009
]
T285_01430
Enzymes [BR:
ljn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T285_01430
Messenger RNA biogenesis [BR:
ljn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T285_01430
Ribosome biogenesis [BR:
ljn03009
]
Prokaryotic type
rRNA helicases
T285_01430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHA96768
UniProt:
A0A7D9N4W6
LinkDB
All DBs
Position
310027..311481
Genome browser
AA seq
484 aa
AA seq
DB search
MKFSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QNLDKQHDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP
AILVGTPGRLLDHLKRGTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLLF
SATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLIDVQNPD
LAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATDVAA
RGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQLTHK
KMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALLKDL
SKDADSVKVKITPEKPLPFKSKHGNNRNFKRNFKRGGDRNERYHRKPSARKGGRKHDFVI
KKKD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattttctgaaatgaacttaaaacctgagattttaaaagctattaagcgttcaggt
tttgaagaagctacaccaattcaagaaaaaaccattcccctcgttttggagggaaaagat
gtaattggtcaagcccagacaggaactggtaaaactgctgcttttggtttgccaatttta
caaaacttagataagcaacacgattcaattcaagctattattattgaacctacccgtgaa
ttggctattcaaacccaagaagagttgttccgtttaggtcgtgatgaaaaagctcgcgtt
caagtagtttatggcggtgctgatattagacgtcagattcgtgctttaaaacaaacacca
gcaattttggtgggaacacctgggcgtttgcttgatcatttaaaacgtggcacaattgat
atttctaaagtcaaaacaattgttttagatgaagcagatgaaatgcttgatatgggattt
attcaagatattgaaagtattttgaaatatgcatcaagtaaacatcaaacattacttttc
tctgctacaatgccaaagccaattttacgaattggtgaaaaattcatgaacgatcctgag
attgtaaaaatcaaaggaaaagaattaactgctaatttaattgatcagtattttgtgaga
gcaaaagaaaatgaaaagttcgacattctatgtcgcttaattgacgttcaaaatcctgat
ttagctgttatttttggtagaactaagagacgtgttgatgaattaacacgtgggctacaa
gcacgtggatataacgctgctggaattcatggtgatctttctcaagctaagcgaatgagc
gtgttaaagagattccgtaaaggtaagctagatattttagttgcaactgatgtggcagct
cgtggattagatatttctggggtaagtcatgtttataactatgatattccgcaggatcca
gattcttatgttcaccgtattggtagaactggacgtgctggtcagaacggaatgtctgta
acttttgttactccaaatgaaattggctatatgcgtactatagaacaattaacgcataaa
aagatgatgccacttaagccaccaactgatgaagaagcatttaaaggtcagctaagtgca
gctaataaaaaggtagcagaattactcgatagtgatctttctaaatatactgaagaagca
tctcaacttcttgacgattattctgcgattgatttagtggccgctttattgaaggacttg
tctaaagatgcagatagtgtaaaagtaaaaattacacctgaaaagccgttaccatttaaa
tcaaagcatggtaataatcgaaactttaaacgtaatttcaaacgtggtggagatcgaaat
gaacgatatcatcgtaagcctagtgcccgtaaaggtggtagaaagcatgatttcgttata
aagaaaaaagattaa
DBGET
integrated database retrieval system
