Lactobacillus johnsonii N6.2: T285_01535
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Entry
T285_01535 CDS
T02941
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ljn
Lactobacillus johnsonii N6.2
Pathway
ljn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ljn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T285_01535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljn03021
]
T285_01535
03400 DNA repair and recombination proteins [BR:
ljn03400
]
T285_01535
Enzymes [BR:
ljn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T285_01535
Transcription machinery [BR:
ljn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T285_01535
DNA repair and recombination proteins [BR:
ljn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T285_01535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AHA96787
UniProt:
A0A7D9N4U8
LinkDB
All DBs
Position
339554..343225
Genome browser
AA seq
1223 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWSC
ACGKYKGIRYRGIVCDRCGVEVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDI
SPRALEEVIYFAAYIVIDAGDTDLEDKQLLTEAEYREKKAKFGDRFEAKMGAEAVKELLE
QVDIDKEVHELKEELKTATGQKRTRAIRRLDILDAFKNSGNKPSWMVMDCIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPRIIVQNEKRMLQEAVDALIDNGR
RGRPVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPELKFYQCGVPRP
MALELFKPFVMHELVKRGLASNIKNAKRKIDREDDDIWDILEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVPGKSIRLHPLACEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAERGREGEGMIFDSPAEAAIAYANGDIHYHTRIGLA
ADSMPEKPWPKGYEHGIFVTTYGKLVFNQIFPKDFYYINDPTQENLTHPVDERYFLQPGE
DIHEKLDNMKLGQAFKKGFLSDSIAQIYKDYKVQRTSDFLDDLKELGYTVCTTSGLTIGV
EDIPTISDKDDIVAEARKKVDVVSKQYRRGLITDEERHDRVISIWNNCKDIVQNEIAQIH
APRNPITIMADSGARGNISNFTQLAGMRGLMAAPNGGMMEIPVTSNFREGLSVLEMFMST
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIIREEDCGTDRGLTVHAITEGDEMIEPLF
DRLVGRYTSKSVYDPETHEVICPADVLMDEDMAHKIVDAGVTEVTIRSVFTCNTQHGVCK
KCYGMNLATGDDVEVGEAVGTVAAQSIGEPGTQLTMRNFHNGGVAGAADITQGLPRVQEL
FEARNPKGRATISEVTGEVTSIEEDPAEHTRQITVKGQTDTRTYDVPYTASVAVAEGDHV
VRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIADKHVEVMARQMLQKV
RILDPGETDILPGELMDIGEFKARNREVIISGGIPATAQSVILGITKAALETNSFLSAAS
FQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGMPVYREMEPKVDVPEDEKKKSV
YSIADIEKKLAAADAEKDNGSAD
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgacgtaaataagtttgaaagtatgcaaatcggtttggcttctccaaacaagatc
agaagttggtcttatggtgaagttaaaaaaccagaaactatcaactatcgtactttgaag
ccagaaaaagatggtttgttcgatgaaaggatcttcgggccaactaaagactggtcttgt
gcttgtggtaagtacaagggtattcgttaccgtggcattgtttgtgatagatgtggtgtt
gaagttacttctgctaaagttagaagagaacgtatgggtcacattgaactagctgcaccg
gtttcacatatctggtatttcaaaggtatcccatctcgtatgggattagtcttagatatt
tcacctcgtgcattggaagaagtaatttattttgctgcttacattgttattgatgcaggt
gatactgatcttgaagataaacaacttttaacagaagctgaatatcgtgaaaagaaagca
aaattcggtgaccgttttgaagctaaaatgggtgctgaagctgtaaaagaacttctagaa
caagtagatattgataaagaagttcatgaactaaaagaagaattaaagactgctactggt
caaaagagaactcgggctatcagaagattagacatcttggatgcctttaaaaattcaggt
aacaagccttcatggatggttatggattgtattcctgttattccaccagacttgagacca
atggttcaacttgatggtggacgtttcgcaacttctgacttgaatgatttatacagacgt
gtaatcaaccgtaacaatcgtttaaagagattgttagacttaaatgcaccaagaattatc
gttcaaaacgaaaagcgtatgcttcaagaagcagttgacgcattaattgacaatggtaga
cgtggacgtccagttgtcggaccaggtaatcgtcctcttaaatctctttctcacatgttg
aaaggtaagcaaggacgtttccgtcaaaacttacttggtaaacgtgttgactactcaggt
cgttcagttatcgatgtttcacctgaattgaagttttaccaatgtggtgtgccacgtcca
atggctctagaattatttaagccatttgtaatgcacgaattagtaaaacgtggtttagca
tctaacattaagaatgctaagcgtaagattgatcgtgaagatgatgatatctgggatatc
ttagaagatgtaattaaagaaagaccagttcttttaaaccgtgcacctactcttcaccgt
ttaggtattcaagcctttgaaccagttttggtacctggtaaatcaattcgtcttcaccca
cttgcttgtgaagcttacaatgccgactttgatggtgaccagatggccattcacgttcca
ttatctgatgaagctgtagcagaatcacgtttgctgatgcttgctgctcaccatatcttg
gctcctaaggatggtaagccaatcgttacaccttctcaggatattgttttgggtaactac
tggttaactcaagcagagcgtggtcgtgaaggtgaaggaatgatctttgattcaccagct
gaagcagctattgcatatgcaaatggtgatattcactatcatactcgtattggtttagca
gctgactcaatgccagaaaagccatggccaaagggctacgaacatggaatttttgtaact
acttacggtaagttagtattcaaccaaattttccctaaggatttctactacattaacgat
cctactcaagagaatcttactcacccagtagatgaaagatacttcttacaaccaggtgaa
gatatccatgaaaagcttgataatatgaagcttggtcaagcctttaagaagggattcttg
tcagattctattgctcaaatctacaaggattacaaagttcaaagaacttctgatttcttg
gatgatttgaaggaactaggctacactgtatgtactacttctggtttaactatcggtgtt
gaagatatccctacaattagtgataaagatgatattgtagcagaagctcgtaagaaagtt
gatgttgtttctaagcaataccgtcgtggtttaatcactgatgaagaaagacatgatcga
gtaattagtatttggaataactgtaaagacattgttcaaaatgaaattgctcaaattcat
gcaccaagaaacccaattacaatcatggccgattctggtgctcgtggtaacatttctaac
tttactcagcttgctggtatgcgtggtttgatggccgctcctaacggaggaatgatggaa
attcctgttacttcaaacttccgtgaaggtttgtctgttttggaaatgttcatgtccact
cacggtgctcgtaagggtatgacggatactgccttgaagactgccaactctggttactta
actcgtcgtttggtagacgtagctcaagatgtcattattcgtgaagaagattgtggtact
gatcgtggtttaactgttcacgcaattactgaaggcgatgaaatgattgaaccattattt
gaccgtttagttggtcgctacacttctaagagtgtttacgatccagaaactcatgaagta
atttgtccagctgatgtcttaatggacgaagatatggctcataagatcgttgatgccgga
gttactgaagtaacaattcgttccgtatttacttgcaacactcaacatggtgtatgtaag
aaatgttacggtatgaaccttgctactggtgacgacgttgaagttggtgaagcagttggt
actgttgccgctcaatcaattggtgaacctggtactcagttaactatgcgtaacttccac
aacggtggtgttgccggtgctgcagatattactcaaggtttacctcgtgttcaagagttg
tttgaagctcgtaatcctaagggtcgtgctacaatttctgaagtaactggtgaagtaact
tcaattgaagaagatccagccgaacacactcgtcaaattaccgttaagggacaaactgat
actcgtacttatgacgtaccatatactgcttcagtagcagttgctgaaggcgatcatgtt
gtacgtggagataagttgactcttggttctatcgatcctaaggaattgattcgtgtacgt
gatgcattgactaccgaaaaatacattctaagtgaaattcaaaaagcttatagaatgcag
ggtgtagaaattgccgacaaacacgttgaagttatggcacgtcaaatgcttcaaaaggtt
cgtattcttgacccaggtgaaaccgatatcttaccaggtgaattgatggatattggtgaa
tttaaggcaagaaaccgtgaagtaattatttccggtggtattcctgctactgcgcaaagt
gtaattcttggtattaccaaggccgctcttgaaactaacagtttcttatctgcagcttcc
ttccaagaaactactcgtgttcttactgatgcttctattcgtggtaagaacgatccatta
cttggtcttaaggaaaatgttattattggtaagattattcctgcaggtactggtatgcca
gtttaccgtgaaatggaacctaaagttgatgttcctgaagatgaaaagaaaaagtcagtt
tattctatagctgatattgaaaagaaattagctgcagctgatgcagagaaagacaatggt
tcagctgactaa
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