Lactobacillus johnsonii N6.2: T285_05390
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Entry
T285_05390 CDS
T02941
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ljn
Lactobacillus johnsonii N6.2
Pathway
ljn03030
DNA replication
ljn03430
Mismatch repair
ljn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
T285_05390
03430 Mismatch repair
T285_05390
03440 Homologous recombination
T285_05390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljn03032
]
T285_05390
03400 DNA repair and recombination proteins [BR:
ljn03400
]
T285_05390
Enzymes [BR:
ljn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
T285_05390
DNA replication proteins [BR:
ljn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
T285_05390
DNA repair and recombination proteins [BR:
ljn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
T285_05390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
Topo-VIb_trans
Motif
Other DBs
NCBI-ProteinID:
AHA97463
UniProt:
A0A7D9N6R9
LinkDB
All DBs
Position
complement(1119281..1122397)
Genome browser
AA seq
1038 aa
AA seq
DB search
MGAVSLQNLSGFTLLESPTKVKNLAENAKKKGYSAIALTDINITYGLVDFYKAAKDTGIK
PLLGMQLRINGLIDEANKYDLIVIAKDDQGYKNILRLSSAVNLLTENGEKENILTFEDLK
KYLGHLILITPSNLHSELKMLQTNNPKMGANYLRKLQDSLPSSSSMYLGVYADSGQQEYI
NYIRSLATQFNLPLTAVEDGQYLNGNEQFLRRTLQAIKTNTHLENIEQLAKQAGSHYLKN
SEELQVIYRKFDIEDALKNAEEIGKICTAEIKFQDPQLPKFKQNKFPTSKEYLHALAQTG
LAKRFNNQIPTKYQERLDYELKVINEMGFDDYFLIVWDVMNFAHSVNITTGPGRGSAAGS
LVSYALRITEVDPIEYDLLFERFLNPARQQMPDIDLDIPDNRRDEVIKYMFEKYGMNHAA
QILTFGTLAAKQVLKDVCRVFGLNKVETYRWLDAIPHSKGKITLAEAYQKSKELQLLVNT
NELSKILFATAEHLENLPRHYSIHAAGLVITDDSLAEIVGLQAGPLGIPVTQQTKLNVES
LGLLKIDFLGLRNLTILGNIVAALRADGIDIDPNHILLDDQETLALFQRGDTDAVFQFES
DGIKRVLEQLHPDSFEDIVAVNALYRPGPMNNIDHFINRKHGKERVQYPDPSLKKILGTT
YGVLVYQEQVMQTAQVLAGFSLGEADLLRRAMSKKNADVIQRERAKFIEGAIKLGHKKET
AEKVYDYIAQFANYGFNRSHAVAYSKIAFWLAYFKVHYPGAFYLALLNSNMGNRHKIAQY
LTQAQEAGIKILPPDIENSKADFSLENGKILVGLKAIRGLRSDLLRQILEIKRPIKSMTD
FLWKIDNNLLSADAVGNLIKAGTFDRLAPNRNELLKINKDLVESVKMAGSNLSLFETLEP
KVEEEKMPTAAEKSAMEVEAMGFSTGINPIIAVQKYARKFNAKRLQVFESNEQGIAVGKL
MKVKQITTKKGDNMAFAVFSDTSGEKDFTIFPQVWEKVGENLKIGEIYLLQVRTQSDRFN
PNKIQFLLSNARQVNFRD
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgggagcggttagtttacaaaatttaagcggttttactctacttgagagtccaactaaa
gttaaaaatttagctgaaaatgctaagaaaaaaggctattctgcgattgctttaaccgat
atcaatattacttatggcctggtcgatttttataaggcagcaaaagataccggaattaaa
cctttactagggatgcaacttagaattaatggtttaattgatgaagctaataagtatgat
ctcattgtaattgccaaagatgaccagggatataaaaatattttacgtttatctagtgca
gttaatcttttaactgaaaatggcgaaaaagaaaatattttaactttcgaagatttaaaa
aaatatctcggccatttaattctaattactccaagcaatttacatagtgaactaaaaatg
ttgcaaactaataatcctaaaatgggagcaaattatttacgaaagctgcaagattctctt
ccgagctcatcttccatgtatttgggagtctatgcggattcaggacagcaagaatatata
aattatattcgctcattagcaacacaatttaacttacctctaactgctgtagaagatgga
cagtatcttaacggtaatgagcaatttttaagacgtacgctgcaagcaattaaaactaat
actcatttagaaaatatagagcagctagctaaacaagcaggctcacactatttgaaaaat
agtgaagaattgcaagtgatttatcggaagtttgatattgaagatgcgttaaaaaatgca
gaagaaattggaaaaatctgtactgcagaaattaaatttcaagatccacaattaccaaaa
tttaagcaaaataaatttcctacttcaaaagagtacctgcatgctttagctcaaacgggt
cttgcaaagagatttaataaccaaatccccactaaatatcaggaaagacttgattatgag
ttaaaagtaattaacgaaatgggatttgatgattactttcttattgtgtgggatgtaatg
aattttgcacatagtgtcaatattacaacaggtccagggagaggatcagcagctggctct
cttgtttcatatgctcttagaattactgaagtagatccaatcgaatatgatttgcttttt
gaacgtttcttaaatccggcccgtcagcaaatgcctgatattgatttagatattccggac
aatcgcagggatgaagtaattaagtatatgtttgaaaagtacgggatgaatcatgcggca
cagattttaacatttggtactttggcggcaaagcaggttttaaaagatgtttgtcgtgtt
tttggattaaataaggttgaaacgtatcgctggttagatgcgattccgcactctaaggga
aaaattaccctggctgaggcatatcaaaaatcaaaagaattgcagctactagtaaatacg
aatgaattaagtaaaattttatttgcgactgctgaacatttagaaaatttaccaaggcac
tattcaattcatgcggctggtttagtaattactgatgattcgctagcggaaatcgtagga
cttcaagcaggccccttaggaattcctgtgactcaacagacaaaattgaatgttgaatca
ttaggtttgttaaaaattgacttcttgggattaagaaatttaacaattttagggaatatt
gttgcagctttaagagcagacggaattgacatagaccctaaccacattctcctggatgat
caagaaacacttgccttgtttcaacgcggagatacggatgcagtatttcagtttgaatct
gatgggattaagcgtgtgcttgaacaacttcatccagatagctttgaagatattgttgca
gttaatgccttataccgtcccggtccaatgaataatattgatcatttcatcaatagaaaa
catggaaaggaaagggttcaatatcctgatcctagtttaaagaaaattctaggcactacc
tacggggttttggtttatcaagagcaagttatgcagacagctcaagttttagcaggtttt
tctttaggagaggctgatcttttaagacgtgcaatgtctaagaaaaatgcggatgtaatt
caacgtgaaagagctaagtttattgaaggtgcaattaaattaggccataaaaaagaaact
gctgaaaaagtttatgactatattgcacagtttgctaattacggatttaatcgttctcat
gccgtggcctatagtaagattgctttttggcttgcttacttcaaagtacattacccagga
gccttctacttagctttgttaaatagcaatatgggtaaccgacataaaattgcccaatac
ctaacgcaagctcaagaagctggaattaagattttgccgcctgatattgaaaatagtaag
gcagatttttcattagagaatggaaaaattttagtcggtttaaaggcaattcggggatta
agaagtgacttattaaggcaaattttagaaattaaacgtccaattaagtcgatgactgat
ttcttatggaaaatagataataatttactaagtgcagatgcggtcggaaatttaatcaag
gccggaacttttgatagactagctcctaatagaaatgaactgttaaaaataaataaagat
ttagttgagagtgtaaaaatggcaggctcaaatttatctttatttgaaacattagagcca
aaagtagaagaagaaaaaatgccaactgcagctgaaaaatcagcgatggaagttgaagcg
atgggctttagtactggcattaatccgattattgcggttcaaaaatatgctcgaaagttt
aatgcaaaacgattacaagtttttgagagtaatgagcaaggaattgcagttggaaagtta
atgaaagtcaaacaaattaccacaaaaaaaggcgataatatggcttttgcagtttttagt
gatactagtggcgaaaaagactttaccatttttcctcaagtctgggaaaaagtaggtgag
aacttgaagattggtgagatatatttacttcaagtgagaactcaaagtgatcgttttaac
cctaataaaattcaatttctactttctaatgctcggcaagttaatttcagagattaa
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