Lactobacillus johnsonii N6.2: T285_06485
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Entry
T285_06485 CDS
T02941
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
ljn
Lactobacillus johnsonii N6.2
Pathway
ljn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
T285_06485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljn03400
]
T285_06485
DNA repair and recombination proteins [BR:
ljn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
T285_06485
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T285_06485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
SLFN-g3_helicase
Kinesin
AAA_22
AAA_7
His_Me_b4a2
UB2H
T2SSE
AAA_5
LAGLIDADG_3
DUF87
AAA
D5_N
Motif
Other DBs
NCBI-ProteinID:
AHA97658
UniProt:
A0A7D9N7D0
LinkDB
All DBs
Position
complement(1335435..1337450)
Genome browser
AA seq
671 aa
AA seq
DB search
MIRRQKNKKFELVSKFQPAGDQEQAIKKLTDGFEQGEKAQILEGATGTGKTFTMANVIAK
LNKPTLVISHNKTLVGQLYGEFKEFFPKNAVDYFVSYYDYYQPEAYVPQSDTYIEKDSSI
NDEIDQLRHKTTSDLMSRNDVIVVASVSCIYGLGDPREYAASVVSLSEGQEISRDVLLRD
LVNIQYDRNDIDFQRGRFRVRGDVVEIFPAGYSDHAFRVEFFGDEIDRIVEVDSLTGEVI
GEREQVSIFPATHFVTNEQIMERALASINDEMNIQVKKFEGEGKLLEAQRIKQRTTYDME
MMSEVGYTNGIENYSRHMEGRKAGQPPHTLLDFFPDDFLILIDESHATMPELKAMYNGDR
ARKQTLIDYGFRLPSALDNRPLKLEEFEKHVNQIMYVSATPGDYELNQTDHKVEQIIRPT
GLLDPEIEVRPIKGQIDDLVGEVNKRIERNERVFVTTLTKKMAEDLTDYLKDLGIKVRYL
HSDIKTLERLEIIRDLRLGKFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRSTRPLV
QTIGRAARNSNGKVIMYADSITDSMREAIDATERRRSLQMKFNKEHGITPKTIVKPIRDV
ISITKDSDDKENKESFADLNFDELTKKQKQNMIKTLTAQMQEAAKKLDFEEAANLRDAIM
DLKKQVHEKKK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgattagacgacaaaaaaataaaaaatttgaacttgtctctaaatttcaaccagcagga
gatcaagagcaagcaattaaaaagttgactgatggatttgagcaaggagaaaaagcacaa
atcctagaaggtgctactggaaccggtaagacttttactatggcaaatgtaatagctaag
ctaaataagccaactttagtaatttctcataataaaactttggttggtcaactgtatggt
gaatttaaagaatttttccctaagaatgccgttgattattttgtgtcttattacgattac
tatcaaccagaagcttatgtaccacaatctgatacttatattgagaaagattcatcaatt
aatgatgaaattgatcaattacggcataagaccactagtgatttaatgtcgagaaatgat
gtaattgttgtggcgtcagtatcatgtatttatggtttaggtgatccgagagagtatgcg
gctagtgtagtctctttatctgaaggccaagagattagccgagatgtgctattacgagat
ttagtaaatattcaatatgatcgtaatgatattgattttcagcgtggacgctttagagta
cgcggtgatgtagtagaaattttcccagcaggatattctgatcatgcatttagagttgaa
ttttttggtgatgagattgaccgaattgttgaagtggattctttgaccggtgaagtaatt
ggagagcgagaacaagtttctattttcccagcaactcactttgttactaatgaacaaatt
atggaaagagctttggcctcaattaacgatgaaatgaatattcaggtgaaaaagttcgaa
ggggaaggaaaacttttagaagctcaacgaattaaacaaagaaccacgtatgatatggaa
atgatgagtgaagttggctacactaatggaattgaaaactattctagacacatggaagga
cgaaaagctggccaaccaccacatactttgttagatttcttccccgatgacttcttaatt
ttaattgatgaatcacatgccaccatgccagaattaaaggcaatgtataatggagatagg
gcacgtaagcaaaccttaattgactatggttttagacttccatctgcgttagataaccga
cctttaaaattagaagaatttgaaaaacatgtaaatcagatcatgtacgtatcagcaact
ccaggtgattatgaacttaatcaaaccgatcacaaggttgagcaaattattcgtcctact
ggattacttgatcctgaaattgaggttagaccaattaagggacaaatcgatgatttagtt
ggtgaagttaataagcgtattgaacgtaatgagcgtgtttttgttacaactttaactaag
aaaatggccgaagacttaaccgactatttaaaggatttagggataaaagtgcgatatcta
cattctgatatcaaaactttagagcgtcttgaaattattagagacttaagactaggaaaa
tttgatgtactaatagggattaatcttttaagggaaggtatcgatgttcctgaagtgtct
ctagttgcaattctagatgctgataaagaaggttttcttcgctctaccagacctttggtt
caaacaattggacgtgctgctcgaaattcaaatggtaaggtaattatgtatgctgattcg
attactgattcgatgcgtgaagcaattgacgctacggagagaagacgtagtctacaaatg
aaattcaacaaagaacacggcattactcctaaaactatcgttaagccaattagagatgta
atttctatcactaaggatagtgatgataaagagaataaagaaagttttgctgacctaaac
tttgatgaattgactaagaagcaaaaacaaaatatgattaagactttaactgcacaaatg
caggaagctgctaaaaagttggactttgaagaagcggctaacttgcgtgatgcaattatg
gacttaaaaaaacaggtgcatgaaaagaaaaagtag
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