Lactobacillus johnsonii NCC 533: LJ_0473
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Entry
LJ_0473 CDS
T00158
Name
(GenBank) probable RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
ljo
Lactobacillus johnsonii NCC 533
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljo03019
]
LJ_0473
03009 Ribosome biogenesis [BR:
ljo03009
]
LJ_0473
Enzymes [BR:
ljo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LJ_0473
Messenger RNA biogenesis [BR:
ljo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJ_0473
Ribosome biogenesis [BR:
ljo03009
]
Prokaryotic type
rRNA helicases
LJ_0473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
T4SS-DNA_transf
AAA_30
MGS
RBDV_coat
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AAS08465
UniProt:
Q74KV4
LinkDB
All DBs
Position
517883..519268
Genome browser
AA seq
461 aa
AA seq
DB search
MAQTSSIFQNEKIRPELQAGLEKINFKKPTKVQSSVIPAFLNKKNVVVQAATGSGKTHAY
LIPILNMIDESAPVTQAIVTAPSRELANQLYKVARQLRDASGLNISIEYLGGGNDRNRQI
EKAESRAPQLIIATPGRLHDFASKKFINLENVKAFIIDEADMTLDMGFLGQMDEIMSKLD
KKAVLGAFSATIPVKLENFLRKYMSKPEFIVIDNPAIIAPTIQNDLIDVGSRDKKSILYK
LLTMGQPYLALVFANTKKTVDELTDYLEEQGLKVAKIHGGITERERKRIIRQVREGQYQY
VVASDLAARGIDVPGVSLVVNYEIPKDLEFVIHRIGRTGRNGLEGHAITLIYDDEMSQIE
DLEKLGIHFDFKDLRNGELVERTHYHRRDNRQTRNHKLDNRMIGMVKKTKKKVKPGYKKK
IKQAIQKDRQQKRKLEERHQIRKAKRKRKREREQARSNFDN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaacaagtagtatatttcaaaatgaaaaaatccggccagaactacaagccgga
ttagaaaaaattaattttaagaaaccgactaaagtacagtcttcggttattccggcattt
ttaaataaaaagaatgttgtagtgcaagctgcaacgggatcaggaaagactcatgcttat
ttgattccaattttgaatatgattgatgagagcgcacctgtaacacaagcaattgttact
gcaccgagtcgtgaattggctaatcaattgtataaagttgcgcgtcagttaagggatgct
agtggtttaaatatttcaattgaatatttaggcggtggaaatgaccgtaatcgccaaatt
gaaaaggctgaaagcagagccccacaattaattattgcaacccctggtcgtttacatgat
tttgcatccaaaaaatttattaacttggagaatgtaaaggcctttattattgatgaagct
gacatgactttagacatgggctttttaggtcaaatggatgaaattatgtctaagttggac
aaaaaagcagtcttaggtgcattttcagctacaatcccagttaagctcgaaaacttttta
agaaagtacatgtcaaagccagaatttatcgttattgacaatccggcaattattgcgcca
acgattcaaaatgatttaattgacgtaggttcaagagacaagaaatcaattttgtataag
ttattaacaatgggacagccatatttagcccttgtttttgctaatacgaaaaagactgtt
gatgaattaacggactaccttgaagaacaaggccttaaagtagcaaaaattcatggtgga
attactgaacgcgaacgaaagagaattattcgtcaagttagagagggacaatatcaatac
gttgtagctagtgacttagctgctcgtggaattgatgtacccggtgttagcttagttgtt
aactatgaaattccaaaagatttagaatttgtaattcaccgaattggtcgaacaggtaga
aacgggcttgaaggacatgctattaccttaatctatgatgatgaaatgagtcagattgag
gacttagaaaaattgggtattcattttgactttaaagatcttagaaatggtgaattagtt
gaaagaactcactatcacagaagagataatcgtcaaacgcgtaaccataaacttgataac
cgcatgatcggtatggttaagaaaaccaagaaaaaagtaaagccaggctacaagaagaag
attaaacaggccattcaaaaagatcgtcagcaaaaacgtaagcttgaagaacgtcatcaa
attcgaaaagcaaagcgtaaacgtaagcgtgaacgtgagcaagcacgtagtaattttgac
aactag
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