Lactobacillus johnsonii NCC 533: LJ_0840
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Entry
LJ_0840 CDS
T00158
Name
(GenBank) hypothetical protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ljo
Lactobacillus johnsonii NCC 533
Pathway
ljo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJ_0840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljo03019
]
LJ_0840
Messenger RNA biogenesis [BR:
ljo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LJ_0840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
COG5_N
Motif
Other DBs
NCBI-ProteinID:
AAS08661
UniProt:
Q74KB1
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All DBs
Position
735879..737501
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AA seq
540 aa
AA seq
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MVNTILVPVAVAIVSVLVGGCAGYSIRKNKWETQAQNAAHDAKHILADAESKAKAVEADL
ASQKEAMKKAAADAKKEKILEAQEEIHHYRERVDNELNERRQEVSRQENRLLQREDAIDH
KDSLLDQKDSQLTQKENQIKKLQAQVLEKENRADQLVTEREKKLYEVAELNQEDAKKIVL
DKLSDQLVKERAEMIEESNQLAKAKADHFARKVIVDAIQSSAADTVSEKTVSVVNLPSDD
MKGRIIGREGRNIRSFEALTGVDVIIDDTPDVVVLSGFDPIRREIAKRALERLIKDGRIH
PARIEEMVDRARKEVNDDIYEAGESALMELGIHKMHPELVKILGRLKYRTSYGQNVLSHS
IEVGKLTGVMAAELGLDEKIAVRAGLLHDIGKSIDHEIEGSHVEIGVELARKYHEPDLVV
NAIAAHHDDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLEQLETIAKGHIGVKQ
AYAIQAGREIRVMVEPDKISDARTTILAHDIRNQIEQDMEYPGNIKVTVIREKRAVAIAK
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatacaattttagttcctgttgctgtcgctattgtttctgtcttagttggaggt
tgtgctggctatagtatccgtaaaaataagtgggaaactcaagcacagaatgcagcccat
gatgcaaaacacatcttggcagatgcagaaagtaaagctaaagctgtagaagctgatctt
gcttcacaaaaagaagcaatgaagaaagctgcagcagatgcaaaaaaagaaaaaattctg
gaagcacaagaagaaattcatcattatcgcgaaagagtggataatgaacttaatgaacga
cgtcaagaggtttctagacaagaaaatcgcttactgcaacgtgaagatgctattgatcat
aaagatagtttgttggatcaaaaagattcacaactcacacagaaagaaaaccaaattaaa
aaattgcaggctcaggttctagaaaaagaaaatagagccgatcaattagtgaccgagcga
gagaaaaagctctatgaagttgcagagttgaatcaagaagatgctaaaaagatcgtttta
gataaactttcagaccaattggttaaggaaagagcagaaatgattgaagaaagtaatcaa
cttgctaaggcaaaagcagatcattttgctcgtaaagtaattgttgatgcaattcaaagt
agtgcagccgatacggtttctgaaaaaactgtttcagttgttaatttaccaagtgatgat
atgaaaggtcgtatcattggccgtgagggtagaaatatccgttcatttgaggctttaact
ggtgtagatgtaatcattgatgatactccagatgtagtagtcttaagtggttttgaccca
attagacgtgaaattgcaaaaagagctttagagcgtttaattaaagatggtcgaattcat
ccagcgcggatagaagaaatggttgatcgtgctcgtaaagaagtaaatgatgatatttac
gaagctggtgaaagtgccttaatggaacttggtattcataagatgcatccagaattggta
aagattttaggacgcttaaagtatcggacgtcttatggacaaaatgttttatctcattct
attgaggtcggtaaattaacaggtgtgatggctgctgaacttggtttagacgaaaaaata
gcggtacgcgcaggattattacacgatattgggaagtcaattgatcatgaaattgagggt
tcccatgtagaaattggtgttgaacttgcacgaaagtatcatgaaccagatttggttgtg
aatgcaattgctgctcaccatgatgatgttcctaagttatcctttattgcagagttagtt
gtagctgctgatacgatttcttcagctcgaccaggtgctagaagtgaatctctagaaaac
tatattcgtcgactagaacaactagaaacgattgcaaagggacacattggtgtaaaacaa
gcatatgcaattcaagcaggacgtgagataagggtaatggttgagccagataagatctca
gatgctcgtactactattcttgctcatgatattagaaatcaaattgaacaagatatggaa
tatcctggtaacattaaggttacggttattcgagaaaaacgtgctgttgcaatagctaag
taa
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