Lactobacillus johnsonii NCC 533: LJ_0864
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Entry
LJ_0864 CDS
T00158
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
ljo
Lactobacillus johnsonii NCC 533
Pathway
ljo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LJ_0864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljo03400
]
LJ_0864
DNA repair and recombination proteins [BR:
ljo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJ_0864
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LJ_0864
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
AAA_29
nSTAND1
nSTAND3
AAA_22
DnaJ_CXXCXGXG
AAA_33
AAA_23
AAA_18
AAA_21
BCA_ABC_TP_C
APS_kinase
AAA_14
SLFN-g3_helicase
NACHT
Mtrc-MtrF_II-IV_dom
AAA_15
Viral_helicase1
RNA_helicase
cobW
DUF87
MMR_HSR1
Septin
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
AAS08685
UniProt:
Q74K89
LinkDB
All DBs
Position
767027..769894
Genome browser
AA seq
955 aa
AA seq
DB search
MANDKIVIHGAREHNLKDISLSIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVESLS
SYARQFLGQMDKADVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGHP
ICPNDGTLIERQSVDQMVDRVMDLPERSRIQILAPVIRSKRGEHKEVFKRIQRAGYVRVI
VDGEMHEITDEFELDKNKRHSIDIVVDRLIVKENIRSRLFDSVEAALRLADGYMYVDVIK
GERINFSEYYACPICGFTVGEMEPRLFSFNAPFGACPDCDGLGMKLSVDEDLVIPDKDKS
LGEGALVPWANSKYYTAMLEQACTALKIPLDKPYKKLTKRQKDLILNGSKGKKIKFHLEG
DFGVNDTVQEFEGILNNINRRYHHPMSKFMRDAMGKYMTELTCSTCHGKRLNEKALAVKV
NGKDIAEASDLSIAKALEFFNSVKLSEQEEMIAKPILKEVRDRLTFLINVGLDYLTLSRS
AGTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLISSLKKMRDLGNSLIV
VEHDDETMKQADYLVDMGPGAGVYGGKVMAAGTPEEVMKNPHSLTGEYLSGKKIVPVPLE
RRKGNGKKITITGAKENNLKNISVDFPLGKLVVVTGVSGSGKSTLVNLILKRALAQKLNN
NSAKPGKYESIKGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRTLFAQTNEAKMRG
YTKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVTYREKNI
SQVLNMTINEACKFFENIPKIHRKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLASELQ
KLSTGNNFYILDEPTTGLHTDDIKRLLEVLQRLVDEGNTVLIIEHNLDVIKNADWLIDLG
PEGGDGGGQVVATGTPEEVAQVKESYTGQYLKPVLERDTELTKQMINNKKEQGES
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatgataagattgttattcacggagcacgggaacataatttaaaagatataagt
ttatcaattccaaaagataaattagtggttattactggtttatcaggttctggaaaaagt
tcactggcatttgataccttatacgctgaaggtagaagacgatatgtagaatcgttatca
agctatgctagacaatttttaggacaaatggataaagctgatgttgactcaattgatgga
ttaaatcccgcaatctcaattgatcaaaagacaacatcacataatccgcgctcaacagtt
ggaactgtaacagaaattaacgattatttacgtttattatgggctcgtgtaggtcatcca
atttgtccaaatgatggaactttaattgaaagacaaagtgtagatcaaatggtagatcga
gtaatggatttgcctgaaagaagtagaattcaaattttagctccagttatccgttctaaa
agaggagaacataaagaggtatttaagcgaattcagcgtgcggggtatgtacgggtaatt
gtagatggcgaaatgcatgaaattactgatgagtttgagctagataaaaacaagcgacac
agtattgatattgttgtggatcgtctaattgttaaagaaaatattcgtagtcggttattt
gattcggtagaagcagcccttcgtttagccgatggttacatgtatgttgatgtgattaag
ggagaacgcattaacttttcagaatactatgcttgtccgatttgtggttttactgttggt
gaaatggaaccgcgtttattttcattcaatgcgccttttggagcttgtcctgattgtgat
ggactaggtatgaagctttcagtagatgaagatttagtaattcctgataaggataagtca
ttaggtgaaggagctttagttccttgggctaactctaagtactatacagcgatgttagaa
caagcctgtacagccttgaaaatccccttagataaaccatataaaaaattaactaaaaga
caaaaggatttaattttaaatggatctaagggaaagaaaataaaattccatctcgaagga
gactttggtgtaaacgatacagttcaagaatttgaaggaattttaaataatatcaatcgt
cgataccaccatccaatgtctaaattcatgcgtgatgcaatgggtaagtatatgactgaa
ctgacttgttcaacttgtcatggtaaaagattgaatgaaaaggctttagccgtgaaagta
aatggtaaagatattgctgaagcatctgatctttcgattgcaaaagcattagaatttttc
aattcagttaaattaagtgaacaagaagaaatgattgctaagccaattttgaaagaagta
cgggatcgtttgacatttttaattaatgttggattagactatcttactttatctcgttct
gctggcactctatctggtggagaagcgcaaagaattagactagcaactcaaattggttct
aacttgtcaggcgttatgtatattctagatgaaccatcaattggtcttcatcagcgtgac
aatgatcgtcttatttcttcccttaagaaaatgagagatcttggaaattctctaattgta
gtagaacatgatgatgaaaccatgaagcaagccgattacttagttgatatgggaccggga
gccggagtatacggcggaaaagtgatggctgcaggtacgcctgaagaagtaatgaagaat
ccccattctttaactggggagtacttatcaggtaaaaagattgttccagttccattagag
cgaagaaaaggtaacggtaagaaaataactattactggtgcaaaagaaaataatttaaaa
aatatctctgtcgattttcctttaggtaaattagttgttgtaaccggagtatcaggttcc
ggaaaatcaacattagttaacttaattttgaaacgtgctctggcacagaagttaaataat
aactctgcaaagcccggtaagtatgaatcaattaagggatataaaaatatcgaaaaaatt
atagatattgatcaaagtcctattggacgaactccgcgtagtaatccagccacatatact
agtgtatttgatgatattcgtactttatttgcccagactaatgaagcaaaaatgcgtggc
tatactaaggctaggttttcttttaacgttaagggcgggcgctgtgaagcatgtcatgga
gatggaattattaagatagaaatgaattttttgcctgatgtgtatgtcccttgcgaagtt
tgtcacggaacaagatataactcagaaaccttagaagtaacctaccgtgaaaaaaatatt
tctcaagttttaaacatgacaattaacgaagcatgcaaattctttgaaaatattcctaaa
attcatcgtaagttacaaacaattgttgatgtaggattaggatatgtaaagttaggacaa
tcagcaactactttgtctggtggggaagcacaaagaatgaagttggcttctgaattacaa
aaactttctactgggaataacttctatatcttggatgaacctacaacagggttgcacact
gatgacattaaacgtctgttagaggtattgcagcgcttagttgatgaaggaaatacagtt
ttaattattgaacataacttagacgtcattaaaaatgcagattggctaatagatttgggg
cccgaaggaggagatggcggtggacaagttgtggctactggtactccagaagaagttgct
caagtaaaagaaagttatactggccaatatttaaaacctgtccttgaaagagatactgag
ttaactaagcaaatgataaataataaaaaggagcaaggggaaagttaa
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