Lactobacillus johnsonii NCC 533: LJ_1174
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Entry
LJ_1174 CDS
T00158
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ljo
Lactobacillus johnsonii NCC 533
Pathway
ljo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LJ_1174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljo03019
]
LJ_1174
03400 DNA repair and recombination proteins [BR:
ljo03400
]
LJ_1174
Enzymes [BR:
ljo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LJ_1174
Messenger RNA biogenesis [BR:
ljo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LJ_1174
DNA repair and recombination proteins [BR:
ljo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LJ_1174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Receptor_IA-2
Motif
Other DBs
NCBI-ProteinID:
AAS08996
UniProt:
Q74JD4
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All DBs
Position
1096388..1098184
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AA seq
598 aa
AA seq
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MKSSIEVLKNVFGYTTFRPGQERVIEQVLKGRNVLAVMPTGAGKSMCYQIPALVNPGVTL
VISPLISLMKDQIDSLKQNGINAAALNSATPQEEVNPILRQAYEGKIKLLYITPERLAMD
YFRYQLNFLDISLVAVDEAHCISQWGHDFRPAYRQIMEGVKSIKSQPNILALTATATPSV
QKDIADQLNIPAENYVITSFARPNLSFKVVDNPKNTNLYLLDYIKKHPNQSGIVYASTRK
NVEELTDYLAQNGILTASYHAGLSNKERADVQDAFQFDKVQVIVATNAFGMGIDKRNVRF
VIHANSTPNLESYYQEAGRAGRDGEPCEGILIYHPKDIRLYRWFIEQSDLDDEYQKIQYQ
KLAAITKYVNTTECLQQFIVRYFGQTCSPCGKCSNCLGTFIEKDITAESKKIISTIYELD
GRFGKNVVADVVTGANNQRMREIRASNFKNYGSLKLGKRAALDLINYLLSHNYLELTDTQ
YPVVHVTNLGWDVLDDKKQVSQKISKNIRKSIQLTNQISEKENNLFLRLKETRLELAKEQ
GIPAFYIFSDKSLRDMALQKPKTKTDFLNISGVGQAKLKAYGQIMLDTIRKYLKEEID
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcaatagaagtactaaagaatgtttttggttatacaacttttcgtcctgga
caagaacgagttattgagcaagttcttaaaggaagaaatgttttagctgtaatgccaact
ggagcaggaaagtcaatgtgttatcagataccagcattggttaaccctggtgtaacgttg
gtaatatctcctttaatttccttaatgaaggatcagatagactctctaaaacaaaatggc
attaatgctgctgctttaaattcagcaactcctcaagaagaagtaaatccaatcttgaga
caagcctatgaaggaaaaataaaacttttatacataactcctgagcgactagcaatggat
tattttcgctatcaattaaactttttggatatttctttagttgcagtagatgaagcccat
tgtatttctcaatggggccatgactttagacctgcgtatcgccaaattatggagggagta
aagtcaattaaaagccagcctaatattttagctttaacagcaactgcaacaccttcagtt
cagaaagatattgcagatcaattaaatattccggctgaaaattatgttattacttcattt
gcaagaccaaatttgagcttcaaggtagtagataatcctaaaaatactaacttatatctt
ttagattatattaaaaagcatcccaatcaatcggggattgtgtatgcgagtacaagaaaa
aatgttgaagagttgactgactatttagctcaaaatggaattttaacagcgagttatcat
gctgggctatctaataaagaaagagccgatgtacaagatgcctttcaatttgataaggtc
caagtgattgttgcaacaaatgcttttggtatgggaattgataaaagaaatgttcgattt
gtaattcacgctaatagtactccaaacttagaatcatattatcaagaagccgggagagca
ggcagagacggagagccatgtgaaggaatattaatttatcacccgaaagatattagacta
tatcgttggtttattgaacaatctgatttagatgatgaataccaaaaaattcaatatcag
aaattagctgcaattactaagtacgtcaatacaacggaatgtttacaacaatttatcgtc
agatattttggtcagacttgctctccatgtggcaaatgttctaattgtttgggaacattt
attgaaaaagatattactgcagaaagcaaaaaaatcatttcaacaatttatgaacttgat
ggacgttttggcaaaaatgtagttgccgatgtagttacaggtgccaataatcagcgcatg
cgagaaattcgggcatctaattttaaaaattatggtagtttgaagttaggaaagagagct
gctttagatttaattaattatctactcagccataactacttggagttaacagatactcaa
tatcctgtagttcatgtaactaatttaggatgggacgttttagatgataaaaagcaagta
agtcaaaagatttcaaaaaatatcaggaaatcaatacaacttactaatcaaatttcagaa
aaggaaaataacctattcttgcgtttaaaggaaacacgcttagaattagctaaagagcag
gggataccggcattttatattttttcagataaatcattaagagatatggcacttcaaaaa
cctaaaacaaaaacagactttttgaatatttcaggtgttggtcaagcaaaactaaaagca
tatgggcaaattatgcttgataccattagaaaatatttgaaagaagaaatagattaa
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