Lactobacillus johnsonii NCC 533: LJ_1492
Help
Entry
LJ_1492 CDS
T00158
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ljo
Lactobacillus johnsonii NCC 533
Pathway
ljo03030
DNA replication
ljo03430
Mismatch repair
ljo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJ_1492
03430 Mismatch repair
LJ_1492
03440 Homologous recombination
LJ_1492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ljo03032
]
LJ_1492
03400 DNA repair and recombination proteins [BR:
ljo03400
]
LJ_1492
Enzymes [BR:
ljo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LJ_1492
DNA replication proteins [BR:
ljo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LJ_1492
DNA repair and recombination proteins [BR:
ljo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LJ_1492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
RNase_H_2
HHH_3
Auto_anti-p27
DEDDh_C
T2SSK
Zn_ribbon_3
YhfH
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AAS09260
UniProt:
Q74IS3
LinkDB
All DBs
Position
complement(1360658..1364956)
Genome browser
AA seq
1432 aa
AA seq
DB search
MTKKNELFKKLLDQIKFPDKFEDNDIVQNGEIENVDVYANERKWKIHVFFDTPLDFETYR
SLNELIHETFEPFVNVELLVQTRDGSSKKLPAYWTYAIQNSTNLKPAVREFLQGQAPYLE
KEKWLIPTQNQVVNGLLSEQVLAELNKEFRRYGFFNIKFTTKVDETNIDENLRSLEQEQA
QHESAMQEFYEKQPAEPKKKMPVKSTRMGNKKVDKKAKFIQIKDLEDGSGNVAIEGHIFN
TDIHELKSGSVIFTGEITDYTDSISFKKFVSDKDQIDYLKGIKPGVWARMQGYAADDQYQ
HDVVFNIRNLELIEHKGREEKYEGEKKRVELHLHTNMSQLDATSTASDFIKTAKKFGQKA
IAITDHADVQSFPEAYHTGASEKMKILYGYEANMIDDHALLVLNPTEMDYRNREYVIFDV
ETTGLSSVYDTIIEIGAVKMKNGEVLERFDEFINPHHPLSDTTINLTSITDEMVGAADDE
KDVIKKFKEFYGDRPLCGHNVQFDVGFVNAALRRAGLEEITQPVVDTLEVSRLLHPEQTR
HTLDSLAKKYNVVLEHHHRANQDAEATGYLMFKLLDAFNERFHEADLGKMNDYAKYGQVY
KRAKPSHMSVLALNQEGLKNMYKLVSLASTKYFYRIPRTPKSELRKYHKGLLFGSGCWQG
DVFISMMQKGYDEAREKARFYDYLEVQPPAAYQTLIEDDLIKDEDELHEIIQNIYKLGKE
LNKPVVATSDSHYVEPHEAIYRKILLAAQKGNSNRNKNLPDLHFYSTQEMLDAFSFLGED
VAKEIVIDNTNKLADQIEEIAPIKSGLYPPHIENADQEMKDLTYNKAYELYGKPLPKIVE
DRIELELNSIISNGYAVIYLISQRLVAKSNKDGYLVGSRGSVGSSLVATMSGITEVNPLA
PHYRCPNCKYSKFFENGEYGSGYDLPDKECPKCGTPLVKDGQDIPFATFLGFHGDKVPDI
DLNFSGDYQPVAHNYIRVMFGPDNSFRAGTIATVADKTAYGYVKHYEDENELHLRKAELD
RLAAGASGVKRTTGQHPAGIVVVPDDMDIYDFTPVQYPADDLSAAWLTTHFDFHSIHDNI
LKFDILGHDDPTMIRMLQDLSGVDPLTIPPDDPGVMSLFSSPEILGVTSEQIQSKTGTLG
VPEFGTKFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEDLINNGTCKLKNVIGCRD
NIMMDLIHWGVKPEVAFFTMESVRHGRGISDENMEILKKNDKIPDWYIPSCLKIKYMFPK
AHATAYILMALRIAWFKVYYPVIYYASYFSVRADLFDLVAMSHGKNTVKAAMKEIQDKGM
DVSAKDKSLLTVLEIANECLERGIKIKMVDVNESEATDFKIIDDHTILAPFNAVPGLGDN
AAKQIVAARAEQKFLSKEDLATRGKVSQTIMEYFENNGVLEGMPDQNQLSLF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaaaagaacgaacttttcaaaaaactattagatcaaatcaagtttcctgataag
tttgaagataacgatattgtccaaaatggtgaaattgaaaacgtggatgtatacgctaat
gaaagaaagtggaaaatccacgttttttttgatacaccattagattttgaaacttatcgc
tctcttaatgaacttattcatgagacttttgaaccatttgtgaatgttgaattattagtt
caaacacgcgatggaagtagtaaaaaactaccggcctactggacttatgccattcagaat
tcaactaacctaaaaccagcggttcgggaatttttacaaggacaagctccttatttagaa
aaagaaaaatggctaattcccactcaaaaccaagtagtaaatggcttgctttcagaacaa
gttttagcagaactaaataaagaattcagacgttatggtttctttaatatcaagtttaca
acgaaagttgatgaaactaatattgatgaaaatttaagaagtctagaacaagagcaggct
cagcatgagtctgctatgcaagaattctatgaaaaacaaccggcagaacctaagaaaaaa
atgcctgttaagagtacaagaatgggcaacaaaaaggtcgataaaaaagctaaatttatt
caaattaaagacttggaagatggcagtggaaacgtagctattgaaggacatatttttaac
acggatattcatgaattaaaatctggaagtgtaatttttactggtgagattactgactat
acagattcaattagctttaaaaaatttgtttctgacaaagatcaaattgattatctaaag
ggaattaaacctggcgtttgggctagaatgcaaggttatgcagctgatgatcaatatcaa
catgacgttgtttttaatattcgaaacttagaattaattgaacataagggtcgagaagaa
aagtatgaaggagagaaaaagcgtgtagaattgcaccttcatacaaatatgagtcaattg
gacgcaactagtacggcgagtgactttatcaaaactgcgaaaaaatttggtcaaaaggca
attgcaattacggatcatgcagatgtgcaatctttcccggaagcttatcatactggtgca
agcgaaaaaatgaaaattttatacggctatgaggccaatatgattgatgatcatgctttg
cttgttcttaatcctacggaaatggattatcggaatcgagaatatgtgatttttgacgtt
gaaacaacaggactatcttctgtttatgacaccattattgaaattggtgcggtaaaaatg
aaaaatggtgaggtcctagaaagattcgatgaatttatcaatccacatcatcccttgagc
gatacaacgattaacttaacatcaattactgatgaaatggttggtgcagctgatgatgaa
aaagatgtaattaagaaatttaaagaattttatggtgatcgtcctctctgtggacataat
gttcaatttgatgttgggtttgtaaatgcggctttacgccgtgcaggtctagaagaaatt
acgcaacctgttgttgacacgcttgaagtttcaagacttttgcatcctgaacaaactcgc
cacacccttgattctttagctaagaagtacaatgttgttcttgaacatcatcaccgcgct
aatcaagatgccgaagctacaggatacttaatgtttaaattgctagatgcttttaatgaa
cgttttcatgaagcagatttaggcaaaatgaatgactatgctaaatatggtcaagtttat
aagcgagctaagccaagtcatatgagtgttcttgctttaaatcaagaaggactaaaaaat
atgtacaagcttgtatcgcttgcaagtactaaatatttctatcgtattccacgtacccca
aagtcggaattaagaaaatatcataaaggtttattatttggtagtgggtgctggcaaggc
gatgtattcatttcaatgatgcaaaaaggatatgatgaagctcgtgaaaaagcacgtttt
tatgattatcttgaagtccaaccgccagcagcttatcaaaccttaattgaagatgatcta
attaaagatgaagacgagctgcatgaaattattcaaaatatttataaattaggtaaagaa
ttaaataaaccagtcgtagctaccagtgactcgcactatgttgaaccgcatgaagcaatt
tatcgtaaaattttattagcggctcaaaagggaaattctaatcgcaataagaatttaccg
gatttacatttttattcaacgcaggaaatgcttgatgcatttagctttttgggtgaagat
gtagctaaagaaattgtaattgataataccaataaattagccgatcaaattgaggaaatt
gctccgattaaaagtggactatatccacctcatattgaaaatgcggatcaagaaatgaag
gatttaacctataataaagcctacgaattatacggaaaacctttaccaaagattgtagaa
gatagaattgaacttgaattgaattctattatttcaaacggatatgcagttatttactta
atttctcaaaggcttgttgccaaatcaaataaagacggatatttagtagggtcacgtggg
tcagttggttctagtttagtagcgacgatgtctggaattacggaagtaaatcctttggct
ccgcactatcgttgtccgaattgcaagtattcaaaattctttgagaatggagaatatggg
tcaggatatgatttacctgacaaagagtgtccaaaatgtggaactccattagttaaagat
gggcaagatattccgtttgctactttcttaggattccatggagacaaggtgccggatatc
gatttaaacttctctggagactatcaaccagtagctcataactacattcgagttatgttt
ggtccagacaattcatttagagcggggacgattgcgactgttgctgataagactgcttat
gggtatgttaagcattatgaagatgaaaatgaactacatttaagaaaggctgagcttgat
cgtctagcagccggtgcttctggagtaaaaagaacaactggacaacacccagcaggtatt
gttgtagtgcccgatgatatggatatttatgactttactccagtccagtatccagcagat
gatttaagtgcagcttggcttacaactcactttgatttccattctatccatgataatatt
ttaaaatttgatattctgggtcacgatgatcctaccatgatcagaatgctacaggatcta
tccggagttgatccattaactattcctcctgatgatccgggagtaatgtctctcttctca
agtcctgaaattttaggtgttacctctgaacaaatccaatcaaaaacgggaacacttggt
gtaccagaattcggtacaaagtttgttagagggatgcttgaagaaacaaaaccaactact
ttctcagaattattgcaaatttctggcttatcgcacggtactgatgtatggttaggaaat
gcagaagacttaattaataatgggacttgtaagttgaagaatgtgattggttgtcgtgat
aacatcatgatggacttgattcactggggtgtaaaaccagaagttgctttctttacaatg
gaatctgtacgacatggtagaggaattagcgatgaaaatatggaaatcttgaaaaagaac
gataagattcctgattggtacattccctcatgtcttaagattaagtatatgttccctaaa
gcccatgctacagcctatatcctgatggcactgagaattgcttggtttaaagtatattat
ccagtaatttattatgcttcttacttctctgttcgtgctgacttgtttgatttggtagca
atgagtcacggcaagaatacagttaaagctgcaatgaaagaaattcaggataagggaatg
gatgtttctgcaaaagacaagtcattacttactgtacttgaaattgcaaatgaatgttta
gagcgtggaataaagattaagatggtagatgtaaacgaatctgaagccacagactttaag
attattgatgaccatacaatcttagcaccatttaatgctgttcctgggttaggtgacaat
gctgcaaagcaaattgtagctgcacgtgcggaacagaaatttctttcaaaagaagatctt
gccactcgcggcaaagtatcacaaacaattatggagtattttgaaaataatggtgttctt
gagggaatgcctgatcagaatcaattgtcactattttag
DBGET
integrated database retrieval system
