| Entry |
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| Name |
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
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| KO |
| K19721 | collagen type V/XI/XXIV/XXVII, alpha |
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| Organism |
ljp Liolophura japonica (common chiton)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ljp00001]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135464814
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:ljp00536]
135464814
Glycosaminoglycan binding proteins [BR:ljp00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
135464814
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
4:14609521..14770280
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| AA seq |
1956 aa
MGIKGQMLRWAVLAVLWMCTSSQDGTGVSLYFTELPQDQAALEGAAAVLRCAVSDRKNVQ
FYWVKDGSYLLNTSRRYEQNGYLHFTEVIKNEDEGTYECVASNIASGFVTFSTPAKLSVK
QTQSSNLRRKRIEKKSPYLAQEITTEIDLLKAIGIPKDNSIRYTDGSDGYPAFHLNTYSE
IRRSSYEFFGQGQTLHPDFAIVILTKPDYIEGGHLFSVVSPAQTIIIFGVMLTSYGSQTQ
QNVVLYYTENAQFRAETVVLANFTIPSTVGQWARIGIQIVESKVSLFLNCEKHDEANVKR
SYSGLAFQDGSTLYIGQAGPNFPEKYSGSFQEMKIYTNPLEAEDAEACDDFDNIPSGSGT
DSPGTNINFVTTESTNRYTPRPSIGLGGTSVKGEKGERGLPGPKGSKGDAGAPGPPGAVV
RPPLITPPPPDIRDLIGEKGDRGDVGLPGRPGLVGSPGLTGQKGDKGEPGVPGLQGLDGI
PGEKGDRGADGFPGNPGIAIQGPKGDPGPPGPPGIYDPRTSGGVVSDGLPEKGEKGDTGF
PGIPGPEGPPGIPGPMGPPGATGPQGEPGIGIRGEPGMIGRPGPPGPPGPPGISIIDMEG
SGDEDMGRPGLRGGGSAGPPGPAGPPGPPGDFVTGPVGPPGPPGVPGIPGKPGAFGLGNS
TGGTPGRDGLPGPRGPPGPPGIMGETGLMGDTGPEGPKGDTGDRGYPGQVGEPGQKGASG
NDGRDGPIGPRGYPGPPGPPGPPGAGGGRGGGFDAFPDIDIGSGEVLPGVPGPPGPQGPR
GYPGDRGPPGPIGPQGPDGPPGPRGPAGLPGDRGSPGLEGPPGPVGPKGNPGFAGSPGLP
GAPGTPGLMGTKGDRGDPGINGVGRDGIPGRPGPPGPPGPPGIVSAGSGTSGDIEVVAEK
GEKGDLGYPGPPGRDGVPGTPGEPGGAGPPGLPGASGEPGLTGLTGAKGERGERGYPGGL
GPAGPPGPPGRGYSGPGDIIPGSGALGGDRPDKGEKGEPGGCKMCVGFKGEPGPPGPPGP
AGPLADNSAAPVFPGTGGVGLPGPRGPPGPRGPPGEIGMPGFPGRPGFRGRKGEPGVGRV
GPPGPPGAPGIPGAGLPGRGGVFIPGPKGDKGDKGDEGPQGPPGRPGVVTSADGNIVIPG
DPGPRGPAGFPGRDGTNGVPGPKGDDGIPGAPGVPGPPGPPGYVSSASGGVVTGPPGPPG
PPGPIGPRGPPGVGERGLPGIPGRPGQPGQGRPGPPGPPGQPYYGRGAEGSARFIPGPPG
PPGPPGAPGIPGAGNGAFSNRVASGAVTFRNQDELFMISVSLPVGTMAFLLDQQRLFLRV
NQGWQLVQLGPLIPLPASTETDRIRINHSGQEGFDSNRIPQTDNRSFVRNGSSNRADAYD
RTNARHREVMLKHRQEMERRREMLARQQRERLEQRKLERQQELDKRQKERDQRRIETENG
ARKQENRRKQQREKEIRRQEEQEKRRRDEIEKRRNGDSEKRKKEEELKRQREELEKRQRE
DMASHRRPGSDKESEAEKLRREEARRQREEWERQRQIEIRSRSRPGSANSHGELQSENSN
RVAEEKRRQELEERRRKELEARRQEIERRRVEAEKRRQEFEKRRREQLEKQRRPDLGRNS
NREEELKRRQQELEKRRREQSENQGRAGTSRNNNNDDELERRQQELERQRRKDLENEKRR
LEERERRRKEEIERRRKLEEQRRKEINNRQRQRGDHHRSRQRPDKAVERGSEQLQDRVSR
WRHGMYQDDSQAGTVAMPTTTPVPVLQFPPLNTQAISNGPRLRLIALNEPVTGKMHGIRG
ADYLCYRQAEDAGLKGTFRAFLSSFAQNIESLVHYPEDKRIPIVNLKDEVLFKSWGDLLN
GNGGHVYQKKTIYSFNGKDVMYDAMWPQKYVWHGSDKKGLLMREKYCHRWHSESKRKNGL
ASSLNKGMLLDSEEFSCNNAFVVLCIENTSKRNVKK |
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| NT seq |
5871 nt +upstreamnt +downstreamnt
atgggcataaaggggcagatgcttcgctgggccgtcctggctgtcttatggatgtgtacc
tcatcccaggatgggacaggcgtgtcgctttacttcaccgaactgcctcaagatcaagcc
gcgctggaaggggccgctgccgtattgcgctgtgctgtttccgatagaaaaaatgtgcaa
ttctactgggtaaaggatggcagctatttgctgaacaccagccgtcggtacgagcagaat
ggatatttacacttcactgaagttatcaaaaacgaggatgaaggaacttatgaatgtgtg
gcttcgaatattgcgtcgggctttgtgactttctcaacgccagctaagctatccgttaag
caaacacaatcatccaatttaagaaggaagaggatagaaaaaaaatctccatatttggct
caggagatcaccacggagatagatcttttaaaagccattggaatcccgaaggacaattct
atacgttacacggatggaagcgatggttacccagcctttcatcttaacacctactctgaa
attcggcggagctcctacgagttttttggccagggtcaaactttgcacccagactttgcc
atcgtgattttaacaaaacctgactacattgaaggcggtcatttgttttctgtcgtgtct
ccggcacagactattatcatattcggtgtaatgttgacgtcgtacggatcacagacacag
caaaacgtggtgctttattacacagaaaatgcgcagtttagggcagaaactgtggttttg
gcgaacttcactattccgtcaacggttggccagtgggcaaggattgggatccagattgtc
gaaagcaaagtttcgctatttcttaactgcgaaaaacatgatgaagccaatgtgaagcga
agttattcaggtttggcgtttcaagacggatctaccctatacatcggacaagctggtccg
aactttcctgaaaagtactctggtagtttccaggaaatgaaaatctacaccaacccattg
gaagcggaggacgcagaagcttgtgacgattttgataatatacccagtggctcaggaaca
gattctcccggaacgaatataaactttgtaacaacagaaagtacaaacagatacacccct
cgcccatcaattggtcttgggggaacatctgtaaaaggggaaaagggtgaaagagggctc
ccaggtccaaagggctctaagggtgatgcaggtgcacccggccctccaggggcagtggta
cgccctccacttataaccccacccccacctgacattagagacttaataggtgaaaagggt
gaccgtggtgatgttgggttgccagggcgaccaggtcttgtgggtagtccaggattgaca
ggacagaagggagacaaaggcgagcctggggtgcctggccttcaaggcctggatgggatt
cccggggaaaagggagaccgtggagcagatggtttcccgggtaatccaggtattgccatt
caggggccaaagggagaccccggccctccggggcccccaggcatatatgaccccaggaca
agtggtggggttgtctcggatggactcccggagaagggggaaaagggtgatactggcttc
cctgggataccaggtcctgaaggacccccaggtattcctgggcccatgggtccccctggt
gccactggaccccagggtgagcccggcattgggattcgtggtgagcctggtatgattgga
cggcctgggccacccggcccacctggtccgccaggaatcagcatcattgacatggaaggg
tcgggtgatgaggatatggggcgacctggtctgaggggaggtggcagtgctggcccacct
ggaccggctggcccacctgggccacctggtgacttcgtaactgggccagttggaccccca
gggccgcctggtgtcccaggaataccaggtaaaccaggcgcatttggattgggtaactcg
acaggtggcactccgggacgtgatggcttaccagggcctagaggtccacctggaccaccg
ggtataatgggagaaactgggctcatgggagacactggtcccgaaggacctaaaggtgat
acgggagatagaggttaccctggacaagttggggagccaggccagaagggtgcttctggg
aacgatggtcgagatggaccaattgggccacgcggttaccctgggccacctggcccacca
ggcccgccaggagctggcggtggcagaggcggtggttttgatgcattcccagacattgac
ataggctctggggaggtcttacctggtgtgcctggacccccaggaccccaggggccaaga
ggttaccctggcgaccgtggacccccaggccccataggaccccagggaccagatggaccc
ccaggaccaagaggtcccgcaggtctgccaggagacagaggaagtcctggtctggagggt
cccccaggcccagtgggccctaaaggtaacccaggatttgcaggttccccagggttacct
ggagctccgggcacacccggactaatggggactaaaggtgacaggggcgaccctggaatt
aatggagtgggccgtgatggaatcccaggtagacctggacccccagggcctccaggaccc
ccgggaatcgtcagcgcagggtctggtaccagcggtgatatcgaggttgttgcagagaaa
ggtgaaaagggagatctaggctacccagggcctccaggacgtgacggtgttcctggaacg
ccaggtgaaccaggcggtgctggacccccgggcctgcctggtgcgtctggggaaccagga
ctaacagggttaacgggtgccaaaggagaacgtggtgagcggggatacccaggtggtcta
ggtcctgcaggacccccaggaccccctgggcggggatattctggccccggagacatcatc
ccaggctcaggagctctcggaggggataggcctgacaaaggggaaaagggagaaccaggt
ggatgtaagatgtgtgtaggcttcaagggggaacctggacccccaggccctcctggtcct
gctggacccttagcagataactctgcggcccctgtattccctgggacaggaggtgttggg
ctcccggggcctaggggaccccctggaccgagaggaccgcctggcgaaatcggaatgcct
ggattcccgggtcgcccaggattccgtggaaggaaaggagaaccaggagtaggacgtgtg
ggtccccctggcccccctggagccccaggaatccccggagcaggtctccctggcagaggt
ggtgtctttatacctggacctaagggtgataagggtgataagggtgatgagggtccccag
ggtccaccaggacggccaggtgtcgtcaccagtgcagatggaaatattgtcattccaggt
gacccaggacccaggggtccagcaggcttcccagggcgggatggcaccaacggagtgcca
ggtcctaagggagatgatggcataccaggagctccaggtgttcctgggccacctggccca
ccaggctatgtttcctctgctagtggaggtgttgtaacaggcccaccaggaccacccggg
ccacccggccctattggacctcgaggcccaccaggtgtaggagaaagaggactcccaggt
attcccgggcgaccagggcaaccaggtcaaggtcggcccggtcccccaggtcctcccgga
cagccatactatgggcggggtgcggagggcagtgccaggttcatacctggcccacctggc
ccaccaggccccccaggggcaccaggaataccaggtgctggaaacggtgcattctctaac
agggtggcttcaggtgctgtaaccttcaggaatcaagatgagcttttcatgatctctgtg
tctctacctgtgggtacaatggctttcctgttggatcaacaaagacttttcctgagggtg
aaccagggctggcagcttgtacaacttgggcctttaattcctttgccagcatcaacggaa
acggatagaatacgaataaatcactcgggtcaagaaggttttgacagcaatcgaattcca
cagactgacaatagaagctttgtgagaaacggttcctctaacagagctgatgcttacgat
agaacaaatgctcgccatcgtgaagtgatgctcaaacatcgccaagaaatggaacgtcgt
cgtgaaatgctagcgagacaacaaagagaaaggttggaacaacgaaaattggaacgacaa
caagaacttgataaacgacaaaaagaaagggatcagagaagaatagaaactgaaaatggc
gcaaggaagcaggagaatcgtcgtaagcagcaaagggaaaaggaaatccgccgtcaagaa
gagcaggaaaaacgcaggcgtgatgaaattgagaaacgaagaaatggtgacagtgaaaaa
cgaaaaaaagaggaagaactcaagcgtcagcgagaggaactggaaaaacgacagcgggaa
gacatggcgtcacacagaaggccaggaagtgataaggagagtgaagctgaaaaactgcga
agggaagaagcacgaagacaacgtgaggagtgggaaagacagcggcaaattgaaattaga
tctcgcagtcgccccggcagtgctaactctcacggggaactgcaaagtgaaaacagcaac
cgtgtcgcagaggaaaaacgacgtcaagagttggaagaaaggagacgtaaggagttggag
gcgagacgacaagaaattgaaagaaggcgagtagaagcggagaaaagacgacaggaattt
gagaaacgaagaagggagcagttggaaaagcaaagaaggcctgatctgggcagaaacagt
aatagagaggaggagttgaaaaggagacaacaggagttggaaaaacgcagaagagagcag
tcagaaaatcagggaagagctggcaccagtcgaaacaacaacaacgacgatgaattagaa
agacggcagcaggagctcgaaagacagaggcggaaggatttggagaatgagaagcgccgt
ttggaagaaagggaaagacgaagaaaagaagaaattgaaagacgaaggaaacttgaggaa
cagcgacgaaaagaaattaataatcgacaacgacagcgtggagaccatcaccgatctcgc
cagcgtcctgataaggctgtagaacggggaagcgaacagctacaggaccgggtgagtaga
tggcgccacggaatgtaccaggacgacagtcaggcggggacggtagccatgcccacaacg
acccctgttccagtactgcagttccctcccttgaacacacaggccatttcaaacggaccc
aggcttcgtctcatcgcccttaacgagccagtgactggtaaaatgcatggtatccgcggt
gcagattacctgtgctaccgtcaagcagaagatgcagggttgaagggaaccttcagagct
ttcctgtcatcatttgcccaaaacattgagtctctggtgcactatcctgaagataagaga
attcctattgtcaaccttaaggatgaagtcctctttaagtcatggggtgaccttctgaat
ggcaatggtggtcatgtttatcaaaagaagaccatatactccttcaacggcaaggatgtc
atgtatgatgccatgtggcctcagaagtatgtctggcatggctccgacaagaaaggatta
ctgatgcgagagaaatattgtcatcgctggcattccgagagtaagcgaaagaacgggttg
gcgagttcactcaacaaagggatgctattagacagcgaagaattcagctgcaacaatgcc
tttgttgttctttgtattgagaatacaagtaaaagaaatgtcaagaaatag |
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