Liolophura japonica (common chiton): 135465977
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Entry
135465977 CDS
T09976
Name
(RefSeq) exosome complex component 10-like
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135465977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135465977
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
135465977
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
135465977
NCBI-ProteinID:
XP_064599429
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Position
5:4160504..4185288
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AA seq
842 aa
AA seq
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MADKHVSSSAGAGPSNVERADSTSDQPIQGFESIDQFTQQGLRSVLGATKSSNDLPAPGD
DFDYYSSFDSFRNVMEVEGRRLIHLMKRILRHQGVKGTLEHTDHLDPEDTFDVLADANDH
ILERVGSSLDEASGVKTATQTLVVASIKGQTTPQASWNKKSPSTSGKSYRLLAAHNIKRP
QLKFRDKVDNANKPFVPIIRTKPNALQSLADSLMIPVSQDANHPSFLYPHPYQYELDQFS
PLPEQFEKVEPQMPDPVSLTAPVFVQTASELAEMVDYLKTEKEIAVDLEHHSYRTFQGFT
CLLQLSSRTRDYLVDALELRADMYILNEVLTDPAIVKVFHGADSDIEWLQRDFGLYVVNM
FDTGQAARVLNYSRFSLAHLLQMYCQVNADKQYQLADWRIRPLPAEMMKYAQEDTHYLLY
IYDLLKNELIEKGNAQRNLLRSVLQRSTQLCGKVYRKNVFTDESYLNLYHQSKKVFNSQQ
LHCLKRLYEWRDKIARLEDESTGYVLPKHMLLQIADILPRERQGILACCNPTPPLIRQCV
NELHGLIMEAREIPLIKVQKERRQQSKSSSQPCVDTSQVCSHDLSHTQCDHDGAEAGTLL
LDSSLLTGSSALFASSRHSTVPVKENAILSAFSSSPKDLPTPSQKKARCILESFHNPFDM
YLPHYTEHMGKTDNKSHKPTTGKQPSLWKLVKNTSKEDIVKKPKELKGPRPEDKPIITKE
EEDTMVPLSHQFQNPKKRKKQDDCTVPSSQAEQPKQKVGKVSGGSSEAFKPYDYSQANMK
MFEAGSHRGRKRHIYDPDGARQKMKEHKVHKSKLPAGAGKKSYTFGKGGKSSSKRDWPSR
RN
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaacatgtgtcttcgtctgccggagcagggccaagtaatgtcgaacgtgct
gactccacatcagaccaacctatccaaggcttcgagagcattgatcagtttactcagcaa
gggttacgctcagttcttggagccactaaatcatccaatgacttgcctgctcctggagat
gattttgattactacagcagttttgattcgttcaggaacgtcatggaagtggagggacgg
cgactcattcatctgatgaaaagaatcttgcgtcatcaaggagtgaagggaacgctagaa
catacagaccacttggacccggaagacacatttgatgttttggcagatgctaatgaccat
atactagagagagtgggtagcagtttggatgaagcatctggagtaaagacggcaactcag
accctggtggtggccagtatcaaggggcagacaactccacaggccagctggaacaagaag
tcacccagtacatccgggaaaagttacagactgctcgcagcgcataacatcaaaaggcca
cagctgaaattcagggataaggtagacaacgccaacaagccgtttgttcctatcataagg
acaaagcctaatgctctccagtcactagcagacagtttgatgatacccgtctcccaagat
gccaatcacccctcatttctatatccacatccataccagtatgagttagaccagttctct
cccttgccggaacagtttgaaaaggtggagccacagatgccagacccagtgtcacttaca
gcccctgtttttgtccaaacagcctctgagctggcagaaatggtggattatttaaaaaca
gagaaagaaatagctgttgacctggagcatcattcatatcggacattccaagggttcaca
tgtctactccagctgtcctcacgtactcgagactatttggtggatgccctggagctcaga
gctgacatgtacattcttaacgaggtcttgactgacccagcaattgtcaaggtatttcac
ggtgctgacagtgacattgagtggcttcagcgagactttgggctgtacgtggtgaacatg
tttgacactggccaggctgccagagttctgaactacagtcgtttctcattggcccacctc
ctgcagatgtattgtcaggtgaacgcagataagcaataccagctggctgattggaggata
cgacctctacctgcagaaatgatgaagtatgcgcaagaagacacacattacctgctgtat
atctacgatttgttgaaaaacgaattgatagaaaaggggaacgcgcagagaaacttgttg
cgatctgtcctgcagagaagtactcagttgtgtggcaaggtttatcgtaagaacgtgttc
acagacgagtcctacttgaacctgtatcatcaaagtaagaaagtgttcaattctcagcag
ctgcattgtctgaagaggctgtacgagtggcgagataagatcgcacgacttgaggatgag
agtacaggatatgtccttcccaagcacatgttgttacagatcgcagacatcttgcccagg
gagagacagggtatcctggcctgttgtaaccccactccacccctcattagacagtgtgtt
aatgagcttcatgggctgatcatggaggccagggaaatacctcttatcaaggtgcagaag
gagagacgccaacagtccaaatcctcctcacagccatgtgttgacaccagccaagtctgc
tctcatgacctctcccacacgcagtgtgaccatgatggtgctgaggcaggaacactgtta
ctggattccagtctcctgacggggtcatctgccttgtttgcttcctccagacatagcacg
gtacctgtgaaggagaatgccatattgtcagccttcagctccagtcccaaggatttaccc
acacccagccagaagaaggccagatgtatactggagagtttccataacccttttgatatg
tatcttccacactacacagagcatatggggaagacagataacaaatcccacaaacctaca
actggaaaacagcctagtttgtggaaactagtcaagaatacaagtaaagaggatattgta
aagaaacctaaagagctcaaaggaccccgcccagaagacaaaccaattataacaaaggaa
gaggaggacacgatggtgccactctcacatcagttccaaaacccaaagaagagaaaaaag
caggacgattgcacagtgccatcgtcacaagcagaacagccaaagcagaaagttgggaaa
gtctcggggggttcttcagaagctttcaaaccatatgactacagtcaggccaacatgaaa
atgtttgaggctgggtcacacagagggaggaaaaggcacatctacgacccagatggtgca
cgccagaaaatgaaggagcataaggttcacaagtcaaagcttccagctggtgctgggaag
aagagttacacatttggcaagggaggtaaatcttcatccaagcgggactggcccagtcgc
cgaaattaa
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