Liolophura japonica (common chiton): 135467223
Help
Entry
135467223 CDS
T09976
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ljp
Liolophura japonica (common chiton)
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ljp03009
]
135467223
Ribosome biogenesis [BR:
ljp03009
]
Eukaryotic type
90S particles
Other 90S particles
135467223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
Spt6_S1
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
OB_RRP5
TPR_19
ARM_TT21
HAT_Syf1_M
Motif
Other DBs
NCBI-GeneID:
135467223
NCBI-ProteinID:
XP_064601057
LinkDB
All DBs
Position
6:42134842..42176774
Genome browser
AA seq
1846 aa
AA seq
DB search
MSAEEENFPRGGVRKKPTDTAKFKSRKNADRDLFKVHSDTRVPKKRKSSQKAEEKQNPKK
QKLGTEASFTPNSGQIELLTHKMICSGMLTLAVVKEVRDYELVVSLPNNLTGTVAITAIS
DTYTELLQKVADQSLDTDEDVHSLDDLFQVGQIVRCKVMDVKQISKGNTSIKLSIKPSDV
NVNVTASSLKTGQVLCGTVVSQEDHGYVIDLGVKGVKTFLSNDDAEKFIQVCNDGFSLKL
AQYLHCYVQTTDHIGMLAGESRSVHVTIDPSKVMTSKVTPNMKLSFFFLVPGMVVTAQIE
KVTQNGLVVGFLSYKAAIHSTHLPKKPKEYEVQQKIQACVLFIHPTTKLVSLSYLPHLLN
NPSKPCSLFTGVQYGDFVERAKITWVESSRGLGFQLTETLKGFCMLRNVSDKKVISLKNQ
FSPGDTHRCRVIGFNYLEAVVLVSLRESHLTRQFMKLTDIQLGSVVECQVRAIHDSGMSV
KLDKWTKGFISSLHLADVPLKHPEKKFKEGDKLKCRVLQIDLAKAKLFLTNKRSLVNSKL
PVISSYDQMEPGMEAEGFIANIKDRGVLVVFYNKIKGWVHKDELSTERVPDPGKVFYLGQ
VVRCRVLSVQPSQQRAQLSFKLGGAGLVSKQQKSTPAPEDFKIGKIVDCKVVRKKDSGLD
VTVLSSDTPAYLPKPHLSDSRENCQQLMKLYQVGDVIKEVMYLTHTSHTLVTHKFSHIQA
SRDGSLVSQFSEIQPGLLLPGTIKNIMEYGVFVEFPGGMFGLAPNKFICDRRLSDISAEF
PVGTSVSAKVVEVDQEKSRFLVSLRLADCYHGNNENMLEVMSTVLMEREEIRAGLQKKRK
DRALKQLSSLADLTVGKLVPVTITNQNRSVVSCDLGNEIRGMCNKDLIEGQTLENGRQHE
AVVLCVNLAELSVDLSLNEEHIRAAKHRKENRFTKVKEGQIIKGEIILVKPDFAVVGLRG
HALGGYAYLPVRKHLNDVLEKVKFSVGEVKSVFIKSVENGLVIGNWLEYVESGETTGEGH
VYDIRKPGLQLGTIAKALVKAVHDLQMNVIVRNSPGRVHITQVPDNTVVGSFPMKKYKDF
VGQRISVKVVGFREVKTHKFLPFSHANAIKSIPECSLLPSVLEKKGLRPGEEIKAKKFKV
GDTVTAYVDHFSGQYLWFVVTHTVRGRAHVLHLSTDAKVVDERTERYQPGQVCQATVLQV
MDRGELELSLIGVPEVIRAGCLTLGLVIGRTHNETALNLHLWGNYIGRVWLTDVMDKYRD
NPLKGFRDGQCVRCRVLSCDLQTSDSEGRHLCSLSLRPSRCRADAKKKVVVDPDVQNLRD
LKEGQILRGFVIKHSSSGIIVCLGHGITGLAIFENISEYFIKDPQVAYPPGKVVTVKILS
INRDTEKLQLSFLKRDTGVAEDVPSEVLGTKRDKTKKMSKTPEEEVSDSVKVKRKSYGEE
EGSRKKRLKTSDSDDTSKTLHKVSGVKDEGKSSDEDDTDDESDSGVDFGDEQVATVQPDK
PLPRLQVSEDFNWDVDYSTIAPPTRQDEISSDSEEETVEQKSSRKSKKAVLKEQKVEEKR
LFELEKEQKSGAQQPQTADDFDRMVLESPDSSLVWLRYVAYHLEMTEIEKARAVLERALQ
TINFREEQEKLNIWVGYLNLENMYGTEESLNSVLTQALRQNDQLSVYSQLINIYVKSAKI
EEGEKLYQTIVKKFSGNKEVWVKFGLFYFKHDNTEAGRKLLQRCLKSLPKQEHLEVISKF
AQLEFKFGEAERGKTMFENILSNYPKRTDLWSVYIDMVTKLDEVDMARQLFERVINLKLS
VKKMKFFFKKYLDFEKSYGTEESMLSVKQKALEYVESRGSLDELEN
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagaagaagaaaacttccctaggggaggagtcaggaaaaaaccaacagacact
gctaaatttaaatccagaaaaaatgcagatcgagatctgttcaaggttcacagtgacaca
cgagtgcccaagaagagaaagagttcccagaaagctgaggagaaacagaatcctaagaag
cagaaactggggacagaggcttccttcacacccaactcaggacagatagaactacttacc
cacaagatgatctgctctgggatgttgactttggcagtggtcaaggaggtccgtgattac
gagctggtggtcagtctgccaaataacctgaccggtacagtggccattactgccatcagc
gatacatacactgaactgttacagaaggtcgccgaccagtcactggacacagatgaggat
gttcacagcctggatgatttatttcaagtgggtcagatagttcggtgtaaagtgatggat
gtgaagcaaatcagtaaagggaatacatccatcaaactgtcgatcaaaccatcggatgtg
aatgttaacgtgaccgccagctcactgaagacaggacaggtattatgcggaacagtggtc
agccaagaagatcacggctatgtcatagatctgggggtaaaaggagtcaagacttttctg
agcaacgatgatgctgagaagtttatccaggtctgcaatgatgggttttccttgaagctg
gctcagtatctccactgttatgtccaaacaactgaccacattggaatgttagcaggggag
agtaggagtgtccatgttaccattgacccctcaaaggtcatgacctcaaaggttacacct
aacatgaagctaagctttttttttctggtaccgggaatggtggttactgcgcagatagag
aaggtaacacagaatggcctggtggtaggttttctgtcgtataaggctgcaatccacagc
actcatctgccaaagaaaccaaaggagtatgaggtacaacaaaagatccaagcctgtgta
ttgtttatccaccccacaacaaagctggtctccctcagttacctacctcatctgttgaac
aacccctccaagccctgctcactcttcactggggttcagtatggtgacttcgtagagagg
gctaaaatcacctgggtggagagctcaagagggctgggctttcaactaacagaaactttg
aaaggcttctgcatgttgaggaatgtgagtgataaaaaggtgatcagtttgaaaaatcag
ttctccccaggtgacacccacaggtgtcgtgtgatcggtttcaactatttagaggctgtt
gttcttgtgtctttaagagagagtcatcttacacgacagtttatgaagttgacggacatc
cagcttggctcagttgttgagtgtcaggtgagagctatccatgacagtggcatgtctgtg
aaattggacaaatggacaaaggggtttatctccagtcttcatttggctgatgttcccctg
aaacatccggaaaagaaattcaaggaaggggacaagttaaaatgtagggtattacagata
gacctggccaaagctaaactcttcctgaccaacaaacgatctctggtgaactccaagctg
ccagtcataagcagttacgaccagatggagcccggcatggaggcagagggcttcatagcc
aacattaaggacaggggtgtgctggtggtattctacaacaagatcaagggctgggttcat
aaagacgagctgagtactgagcgagtacctgacccagggaaggtgttctaccttgggcaa
gtggttagatgtagagttcttagtgttcagccctcgcagcagagagcacagctctcattt
aagcttggaggtgcaggactggtaagcaagcaacaaaagtcaaccccagcaccggaagac
ttcaaaataggcaagattgtagactgtaaggtagtgaggaagaaggactctggattagat
gtgactgttctttcctctgacacccctgcttacctgcccaaacctcacctgtccgactca
cgggagaactgtcagcagctgatgaaactgtaccaagtgggagacgtgatcaaagaggtc
atgtacctgactcatacttcacacaccctggtcactcacaagttctcccacatccaagcc
tctcgtgacggaagcttagtctcacaattttcagaaatacagcctggtctacttctacca
ggaacaatcaagaacatcatggagtatggggtgtttgtagagttcccaggaggcatgttt
ggccttgctcctaataagtttatctgtgataggagactttcagacatctctgccgagttt
ccagtcggtacgtctgtcagtgctaaagtggttgaagtagatcaagagaaatcacgcttt
ctcgtcagcttaaggcttgcggattgttaccatggtaacaatgaaaacatgctggaggta
atgagcactgtattgatggagagagaggaaatcagagcaggactacaaaagaagagaaaa
gatagagcattgaaacaactgtccagtttggccgatttgaccgttggcaagttagttcct
gtgacgataactaatcagaaccggtcagttgtgtcatgtgatctgggaaacgagatacga
ggaatgtgcaacaaagatcttattgaaggtcagacacttgagaatggccgtcagcatgaa
gccgttgtcctttgtgtcaacctggcagagctaagtgtagatctgtctctaaatgaggag
cacatacgagcagccaagcacaggaaagaaaaccgtttcaccaaggtgaaggaagggcaa
atcattaaaggggagataattcttgtcaagccagactttgctgttgtgggacttcgtggg
catgccttaggaggatatgcctatctcccagtcaggaagcaccttaatgatgtcttagag
aaggtgaaattctcagtaggcgaggtcaaatcagtatttatcaaaagtgttgagaatgga
ttagtgattgggaactggttggagtatgtggagtcaggggagacaactggggaaggccac
gtgtatgacatcagaaagcctgggctgcaactgggaaccatagcaaaggctttagtaaaa
gccgtccatgatctgcagatgaatgtcattgtaaggaacagtccaggtagagtccacatc
acccaggtcccagacaacacagtcgtgggttcatttccaatgaaaaaatacaaagatttt
gtcggtcaaagaatatcggtgaaagtggttggatttagagaggttaaaactcacaaattt
ttaccgttctcccatgctaatgccatcaagtctatcccagaatgcagtcttctaccaagt
gtgttagagaagaagggactaagaccaggagaggagattaaagccaaaaagtttaaggtt
ggagacacagtgaccgcctatgtagatcatttttccggccagtatctgtggtttgttgtg
acgcacactgtgagagggagagcacatgtccttcacctctccaccgatgccaaggtggta
gatgagcgaacagagcgttatcagccagggcaggtgtgtcaagccacagtgcttcaggtg
atggatagaggagaactggaactctcactcataggcgtgcctgaggtgatcagagctggc
tgtttgacattgggcttggtgataggccgcactcacaatgagacagccttgaaccttcac
ttgtggggtaattacattggaagggtgtggctaactgatgtgatggacaagtacagggat
aacccgctcaagggcttcagggatggccagtgtgtccgctgtcgggttctatcatgcgac
cttcaaacctctgattctgaaggtcgtcatctttgttccttgtctctgcgcccttctaga
tgtcgtgcagatgccaagaagaaagttgtggttgacccagatgttcagaatcttagggac
ctgaaggaggggcagattttgagggggtttgtcatcaaacacagcagctctggtatcata
gtttgccttgggcatggcattactggcctggcgatctttgagaacatatccgagtatttt
atcaaagacccgcaggtggcgtatcctccaggaaaagtagtaacagtcaaaatactcagc
attaacagggataccgagaaattacaactgtcatttctgaagagagacacgggtgtagca
gaagatgtaccatctgaagttctgggcactaaacgagacaaaaccaagaagatgagcaaa
acacccgaggaggaagtgtcagacagtgttaaggtcaagaggaaaagctatggtgaagag
gaagggtctagaaagaaacgattgaaaacgagcgattctgatgatacaagcaaaactctt
cacaaagtttcaggtgttaaagatgaaggcaagagcagcgatgaagacgatacagatgat
gagtcagatagtggggtggatttcggtgatgagcaggtagcgactgtccagccagacaaa
cctctacctagacttcaggtatcagaggacttcaactgggatgttgactactccacaata
gcacctcctaccagacaagatgagataagcagtgattctgaggaggagacagttgaacag
aagtcatcgaggaagagtaaaaaagctgttttgaaggaacaaaaagtggaagagaaaaga
ttatttgagcttgagaaagagcaaaagagtggtgctcagcagccgcagacagctgatgat
tttgataggatggtactggagtcgccagacagcagcctggtatggttacgttatgtggcg
tatcacctggaaatgacggaaatagagaaagccagggctgtgttggagcgagcacttcag
acaattaacttcagagaagagcaggagaagctgaacatctgggtgggttaccttaacttg
gagaacatgtatgggacagaggagagcctgaactctgtgctcacccaagccctacggcag
aatgaccagctctctgtctacagtcagcttatcaacatctatgtcaagtcagccaaaatt
gaggaaggggaaaagttgtatcagaccatagtgaagaagtttagtgggaacaaggaggtg
tgggtgaagtttggcctgttctatttcaaacacgacaacacggaggcgggacgcaaactc
ttacagaggtgcctcaagagtttgcctaagcaggaacatttggaggtcatctccaagttt
gcccagctggaatttaagtttggtgaagcggagagagggaagacgatgtttgagaacatt
ctgagtaattaccccaagaggactgacctctggtcagtgtatatagacatggtcactaaa
ctggatgaagtggacatggctagacaattgtttgagagagttataaaccttaagctgtca
gtgaagaaaatgaagtttttctttaaaaaatacttggactttgagaaatcatatggtaca
gaagagagtatgctgtctgtgaaacagaaagccttggagtatgtggagtcgagaggatct
ctggatgaactggagaactga
DBGET
integrated database retrieval system
