Liolophura japonica (common chiton): 135469127
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Entry
135469127 CDS
T09976
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03020
RNA polymerase
ljp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135469127
09124 Replication and repair
03420 Nucleotide excision repair
135469127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljp03021
]
135469127
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135469127
Enzymes [BR:
ljp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135469127
Transcription machinery [BR:
ljp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135469127
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135469127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
135469127
NCBI-ProteinID:
XP_064603728
LinkDB
All DBs
Position
6:58165997..58184669
Genome browser
AA seq
1175 aa
AA seq
DB search
MYGEEEEMMYGDEEGDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIV
EDSPQIDLQAEAQHTSGIVETPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTVVKEGEDPVETQHHKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFQQKDSKYAYKTEIRSCLEHSSRPTSTLWVNM
MARGGSGAKKSAIGQRIIAILPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMME
MVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCET
KKAYFLGYMVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRIYA
QKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL
SHLRRLNSPIGRDGKLARPRQLHNSHWGMICPAETPEGAAVGLVKNLALMAYISVGSQPS
PILEFLEEWSMENLEEVAPSSIMDATKIFVNGCWVGIHRDPEQLMNTLRKLRREMDVIVS
EVSMVRDIQDREIRIYTDAGRICRPLLIVENQKLLLKKSHVDKLKQREYNNYSWQELVAS
GVVEYIDPLEEETIMLAMTPDDLQDKEVAYCSTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGIYITNYHVRMDTLAHGLYYPQKPLVTTRSMEYLRFRELPAGINSI
VAIMSYTGYNQEDSVILNASAIERGYFRSFFYRSYKDSESKKGLDQEEIFEKPTRETVQG
MRHAIYDKLDDDGIIAPGTRVSGDDVLIGKTITLPASEDELEGETKRFTKRDSSVFMRRS
ETGIVDQVMVTINQEGYKFCKIRVRTVKSPQIGDKFASRHGQKGTCGITYRQEDMPFTCE
GISPDIIINPHAVPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSQLLHLYG
YHLRGNEVLFNGFTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRS
RDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNICGLIAIANLRNQTFECRG
CKNKTQISQVRMPYACKLLFQELMSMSIAPRMMVS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtacggggaagaagaagagatgatgtatggggatgaggagggggatgagataacccct
gatctgtggcaggaggcgtgctggattgtcattagctcatactttgacgaaaagggcttg
gtgagacaacagcttgattcatttgacgaattcattcagatgtctgtacagaggattgtg
gaggattcacctcagattgaccttcaggctgaggctcaacatacttctggcattgtggaa
acaccaccgagatatctactgaagtttgagcagatttatctgtcaaaacctacacattgg
gagaaggatggtgctcctagtcctatgatgccaaatgaagccaggctaagaaatttgaca
tactctgccccactgtatgtggatattacaaagactgtagtcaaagagggggaggaccca
gtagagacgcagcatcataaaacattcatcgggaagattcccatcatgcttcgctccaca
tattgtctgctgaatggcctgacagatcgtgatttgacagagttgaacgagtgtccccta
gacccagggggatacttcatcattaatgggtcagagaaggttcttattgctcaggaaaaa
atggccacaaatacagtgtatgtgttccagcagaaagactctaagtatgcatataagaca
gagatccgatcatgcctggaacactcctctcgccccaccagtacactatgggtgaatatg
atggccagaggaggttcgggtgccaagaagagtgctattggtcagagaatcatcgccatt
ctaccatacattcgacaagagattcccatcatcattgtgttcagagccttgggttttgtg
tctgacagagatatcctcgagcacatcatctatgattttgatgaccctgagatgatggaa
atggtaaaaccctcattggacgaggcttttgtcatccaggagcagaatgttgctcttaac
ttcatcggtgctcggggtgctaagccaggtgtcactaaagaaaaacgtatcaaatacgcc
agagaaatcctacagaaggaaatgttgccccatgtgggcgtcagtgatttctgcgagacc
aagaaagcttactttttggggtacatggttcaccgtctgcttctggcagccctggggaga
cgggaagtagacgacagggatcactatggcaacaagaggctggacttggctggacctttg
ctggccttcctcttcagagggctgttccgtaacctgatgaaggaggtcaggatttacgct
cagaagtttattgaccgtgggaaagactttaatctggagctggctatcaagacaaggata
attacagatgggttaaagtattcactggctactgggaactggggcgatcagaagaaggct
caccaggctagagcaggagtatcacaggtgttgaacagactgacttttgcctcaacactt
tcccatctgaggcggttaaattctcctattggacgcgatggtaaacttgcccgtcctcga
caacttcacaactctcattggggaatgatctgtcctgccgagacaccagagggtgctgct
gtgggcctagtaaagaacctagctctgatggcgtacatctctgtgggctcacaaccctcc
cccatcctggagttcttggaggaatggagtatggagaaccttgaggaggtcgctccgtca
tccatcatggatgcgacaaagatctttgtgaatggctgctgggtggggatccatcgtgac
ccagagcagctgatgaacactctgaggaaactgcgacgtgaaatggacgtcattgtgtct
gaagtttccatggtgagagatatccaggacagggagattcgtatctatacagatgcaggc
cgaatctgtcgacctctgctcattgtagagaaccagaaactactgctgaagaaaagtcac
gtggataaactgaaacaacgagagtacaacaattacagttggcaggagctggtagccagt
ggggttgtggagtacattgaccccctggaggaggagaccatcatgttggccatgacccca
gatgaccttcaggataaggaggtggcctactgttctacctatacacattgtgagattcac
cccgccatgatcctgggtgtctgtgcctctattataccattcccagatcacaaccagtct
ccccgtaacacataccaatctgctatggggaaacaggccatgggcatctacatcacgaac
taccatgtgaggatggacaccctggctcatggcctgtactacccccagaagcccctagtc
accactcgctctatggagtacctccgcttcagggaattacccgcaggtatcaactccata
gtagcgatcatgtcctacactggatacaatcaggaagattctgtcatcctgaatgcttct
gccattgagaggggctatttcaggtcatttttctaccgatcttacaaagactctgagtct
aagaaaggtttagatcaagaggagatctttgaaaagccaacaagagaaactgttcaaggt
atgagacatgccatctatgacaagttggatgatgatggtataatcgccccagggacccga
gtgtccggtgatgatgtgctgattgggaaaaccatcactctgccagcctctgaggatgag
ttggaaggtgagactaagcggttcacaaagagagactccagtgtgttcatgaggagaagt
gagactggtattgtagaccaggttatggtgacgataaaccaggaagggtacaagttctgt
aagatccgtgttaggacggtgaagagtcctcagattggggacaagtttgccagtcgtcat
ggacagaagggtacctgtgggatcacttacaggcaggaggacatgccgtttacatgtgaa
ggtatcagcccagacattatcatcaacccccacgccgtacccagtcgaatgacaattggc
catttaatcgagtgtctccagggtaaggtgtcggctaataagggggaaatcggtgatgcc
acgcccttcaacgatgctgtcaacgtgcagaaagtctcccagctgttacatctctacggc
tatcatctccgagggaatgaggttctcttcaatggcttcactggcaggaaggtgaatgct
cagatattcttggggcccacatattaccagcgtctgaagcatatggtggatgataagatc
cattctagggcgagaggccccctccagatcctcaacaggcaacctatggaaggtcgatca
agggatggaggtttgcgttttggtgagatggagcgtgattgtcagatcgctcacggagct
gcccagttcctcagagagaggctgtttgaagcatccgacccttacagagtgcacgtctgt
aatatctgtggactcattgctattgctaacttgaggaaccagacgtttgaatgtcgtgga
tgtaaaaacaaaactcagatctcccaggtgcgtatgccatatgcctgtaagctgctcttc
caagagttgatgtcaatgagcattgcccccaggatgatggtcagctga
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