Liolophura japonica (common chiton): 135469826
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Entry
135469826 CDS
T09976
Name
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135469826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135469826
03041 Spliceosome [BR:
ljp03041
]
135469826
03009 Ribosome biogenesis [BR:
ljp03009
]
135469826
03016 Transfer RNA biogenesis [BR:
ljp03016
]
135469826
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135469826
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135469826
Spliceosome [BR:
ljp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135469826
Complex C
U4/U6.U5 tri-SnRNP related factors
135469826
Ribosome biogenesis [BR:
ljp03009
]
Eukaryotic type
Pre-60S particles
Helicases
135469826
Transfer RNA biogenesis [BR:
ljp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135469826
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135469826
NCBI-ProteinID:
XP_064604506
LinkDB
All DBs
Position
7:complement(33482417..33503830)
Genome browser
AA seq
1036 aa
AA seq
DB search
MDTFGGEDLFSVFGENEEKTNEKSQSSGKKKRPVSQETTGKRSDQERAEDLLRSITDKRP
QSEQNVQEKTAKKFKADIKEEISLTEVMPRIQIHRVDTVEACLHEVAIPPDAEFVPLKPS
VEKPAKEYPFILDPFQKEAVLCLENSQSVLVSAHTSAGKTVVAEYAIAMSLRSKQRVIYT
TPIKALSNQKYREMMEEFQDVGLMTGDVTINPNASCLIMTTEILRSMLYRGSEVMREVAW
VVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVY
TEYRPTPLQHYIFPAGGDGIHLVVDENGEFREENFNAAMNVLKDAGDAAKGDRRGRRGGV
KGGNESNCFKIVKMIMERSFAPVIVFSFSRKECEAYALQMSKLDFNTEEEKGMIEEVFNN
AIDALSDEDKKLPQVEHVLPLLKKGVGIHHSGLLPILKETIEILFAEGLIKALFATETFA
MGLNMPARTVLFTSCRKFDGKDFRWLTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPS
AGKLIVKGKADALNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNYAAIPELYEKLK
ELEEKYNSLSIPNEDNVSSYYKIRQQLDNLGKTLISYIQKPQYILPFLQPGRLIQVKNGE
EDFGWGMVVNFQKKANQSDAPVVGEPSYVVEVLLHLTKDSARSNRTSAVKPCPPGERGEM
QVVPVLLSLVKAISSIRVYFPSDLRPVDNRQSVLKSIQEVQKRLPDGLPLLDPVEDMGIK
EKGLGDVVRKIEAFEQRLYSHPLHKDAKLPELYDQYSKKAQVGSEIKSLKSELKKKKSLL
QMDELKCLKRVLRRMGYATASDVIEMKGRVACEISTADELLLTELLFNGVFNELNVQQCC
ALLSCFVFQEKANEMPKLTEALSGPLRIMQDTARRIARVSAEAKIELDEETYVESFKPQM
MDVVNAWASGVTFGQICKMTDVFEGSIIRCMRRLEETLRQMVQAAKAIGNTELENKFSEG
IRKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggacacatttggcggagaagatttattttctgtatttggcgaaaatgaagaaaaaaca
aatgagaaatcccagagttctggaaagaagaaacggccggtatcccaagagacaactggt
aaaagatctgaccaagaaagggctgaagatcttctccgtagtatcactgataaacgacca
cagagtgaacaaaatgtgcaagagaagacagccaaaaagttcaaagcagatatcaaggaa
gagatcagtctgacagaggttatgccacgtatccagattcatagagttgatacagtggag
gcctgtttacatgaggttgctatcccaccagatgcagagtttgttccccttaaaccttca
gtagaaaagccagcaaaggagtacccattcattcttgatccgtttcaaaaggaagctgtg
ttgtgtctagagaacagccagtctgtgttggtgtctgcccatacgtcagctggaaaaact
gttgtggctgagtatgctatagctatgtcactaaggagcaaacaaagggtgatctacaca
acaccaatcaaagccctcagcaaccagaagtatagggaaatgatggaggagttccaggat
gtaggcttgatgactggggacgtcaccatcaacccaaatgccagctgtctcattatgacc
acagagattttgcgtagtatgttgtaccgtggatcagaggtgatgagagaagtggcttgg
gtcgtgtttgacgagatacattatatgcgggacaaagagaggggtgttgtttgggaggag
actatcatattactaccagacaacgtacattatgttttcttgtctgccacaattccgaat
gcaaggcagtttgcagagtggatctgctatctgcacaaacagccttgccatgttgtgtat
actgaataccgtccaacaccattacaacattacatcttcccagctggaggggatggcatt
catctagtagtggatgaaaacggtgaatttcgtgaagagaatttcaacgcggccatgaat
gtgttaaaagatgctggggatgctgctaaaggtgaccgtcgaggcaggagagggggagtc
aaaggaggtaatgagtcaaactgtttcaaaattgtgaaaatgatcatggagcgaagtttt
gcccctgtcatcgtgttcagctttagcaggaaagaatgtgaagcttatgcactacagatg
tcaaaacttgactttaacacagaggaagaaaaaggcatgatagaagaagtttttaacaat
gccattgatgcattgtcagatgaggataaaaagctgcctcaggtagagcatgttcttcca
ttgttaaagaaaggtgttgggattcatcactccggactcctgcccatcctaaaagaaacc
attgagattctttttgcggaaggactcattaaggccctgtttgccacagagacatttgct
atggggcttaacatgcctgccagaactgtgcttttcaccagctgcaggaaatttgatggt
aaagatttcagatggttaacctctggagaatacatccagatgagtgggcgtgcaggaagg
cgtggccttgatgaccgaggcattgtgatactcatggttgatgaaaagatgagtccttct
gccggtaaactaattgtcaagggtaaagcagatgcactgaacagtgcattccatctgacc
tacaatatggtgttaaacctgcttcgtgtggaggagatcaacccagagtacatgctggag
aggtcctttttccagttccagaattatgcagccataccagaactctatgaaaaattgaag
gagctagaagaaaagtacaatagtctttccattcccaatgaagataatgtgtcctcatac
tacaagatccgtcaacagcttgataacttggggaagaccttgatatcctacatacagaaa
cctcagtatatattaccttttctccaaccaggcagattgatacaggtaaaaaatggtgag
gaagactttggctggggtatggttgtcaactttcagaagaaggcaaatcaatcagatgcc
ccagttgtgggtgagcccagttacgtggtagaagtcctgttacacctgaccaaggatagt
gcccgaagcaatcgcacatctgcggtcaaaccatgtcctccaggagaaaggggagagatg
caggtcgttcctgttttgttgtctttggtaaaggctatcagttcaatccgagtctatttt
ccatcagaccttcgaccagtagacaacagacagagtgtactcaagtccattcaggaagtt
cagaagaggttacctgatggcctgcctttactggatcccgtagaagacatgggaataaag
gagaagggcctaggagatgtggtcaggaaaatcgaagcctttgagcaacgtctttattct
catccactacacaaagatgccaagctaccagagctttatgatcaatattcaaagaaagca
caggttggttctgaaattaaatccctgaagtctgaactgaaaaaaaagaagtcattgctg
cagatggatgaattgaaatgtctgaagcgtgtgttgaggagaatgggttatgccacagcc
tctgatgtgatagaaatgaagggaagagtggcatgtgaaattagcacagctgatgaatta
ctactcacagaactgctgttcaatggtgttttcaatgagctcaatgttcagcaatgctgt
gcccttcttagctgttttgttttccaagagaaggccaatgaaatgcccaagctgaccgag
gctctttctggtcccctaaggataatgcaggacacagccaggaggatagcacgggtgagt
gctgaggccaagattgagttggacgaagagacatacgtggaatcattcaagcctcaaatg
atggatgtggtcaatgcctgggcttcaggggtaacatttggtcaaatctgtaaaatgaca
gatgtatttgaaggcagtattataaggtgtatgaggcggttggaggagactctgagacaa
atggtgcaggcagcaaaagccattgggaacacagagttggaaaataaattctcagaaggg
atacgaaaaatcaagagggacattgtctttgctgccagtttgtacttgtga
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