| Entry |
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| Name |
(RefSeq) LOW QUALITY PROTEIN: exosome RNA helicase MTR4-like
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| KO |
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| Organism |
ljp Liolophura japonica (common chiton)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ljp00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135469826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ljp03019]
135469826
03041 Spliceosome [BR:ljp03041]
135469826
03009 Ribosome biogenesis [BR:ljp03009]
135469826
03016 Transfer RNA biogenesis [BR:ljp03016]
135469826
Enzymes [BR:ljp01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135469826
Messenger RNA biogenesis [BR:ljp03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135469826
Spliceosome [BR:ljp03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135469826
Complex C
U4/U6.U5 tri-SnRNP related factors
135469826
Ribosome biogenesis [BR:ljp03009]
Eukaryotic type
Pre-60S particles
Helicases
135469826
Transfer RNA biogenesis [BR:ljp03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135469826
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
7:complement(33482417..33503830)
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| AA seq |
1036 aa
MDTFGGEDLFSVFGENEEKTNEKSQSSGKKKRPVSQETTGKRSDQERAEDLLRSITDKRP
QSEQNVQEKTAKKFKADIKEEISLTEVMPRIQIHRVDTVEACLHEVAIPPDAEFVPLKPS
VEKPAKEYPFILDPFQKEAVLCLENSQSVLVSAHTSAGKTVVAEYAIAMSLRSKQRVIYT
TPIKALSNQKYREMMEEFQDVGLMTGDVTINPNASCLIMTTEILRSMLYRGSEVMREVAW
VVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVY
TEYRPTPLQHYIFPAGGDGIHLVVDENGEFREENFNAAMNVLKDAGDAAKGDRRGRRGGV
KGGNESNCFKIVKMIMERSFAPVIVFSFSRKECEAYALQMSKLDFNTEEEKGMIEEVFNN
AIDALSDEDKKLPQVEHVLPLLKKGVGIHHSGLLPILKETIEILFAEGLIKALFATETFA
MGLNMPARTVLFTSCRKFDGKDFRWLTSGEYIQMSGRAGRRGLDDRGIVILMVDEKMSPS
AGKLIVKGKADALNSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNYAAIPELYEKLK
ELEEKYNSLSIPNEDNVSSYYKIRQQLDNLGKTLISYIQKPQYILPFLQPGRLIQVKNGE
EDFGWGMVVNFQKKANQSDAPVVGEPSYVVEVLLHLTKDSARSNRTSAVKPCPPGERGEM
QVVPVLLSLVKAISSIRVYFPSDLRPVDNRQSVLKSIQEVQKRLPDGLPLLDPVEDMGIK
EKGLGDVVRKIEAFEQRLYSHPLHKDAKLPELYDQYSKKAQVGSEIKSLKSELKKKKSLL
QMDELKCLKRVLRRMGYATASDVIEMKGRVACEISTADELLLTELLFNGVFNELNVQQCC
ALLSCFVFQEKANEMPKLTEALSGPLRIMQDTARRIARVSAEAKIELDEETYVESFKPQM
MDVVNAWASGVTFGQICKMTDVFEGSIIRCMRRLEETLRQMVQAAKAIGNTELENKFSEG
IRKIKRDIVFAASLYL |
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| NT seq |
3111 nt +upstreamnt +downstreamnt
atggacacatttggcggagaagatttattttctgtatttggcgaaaatgaagaaaaaaca
aatgagaaatcccagagttctggaaagaagaaacggccggtatcccaagagacaactggt
aaaagatctgaccaagaaagggctgaagatcttctccgtagtatcactgataaacgacca
cagagtgaacaaaatgtgcaagagaagacagccaaaaagttcaaagcagatatcaaggaa
gagatcagtctgacagaggttatgccacgtatccagattcatagagttgatacagtggag
gcctgtttacatgaggttgctatcccaccagatgcagagtttgttccccttaaaccttca
gtagaaaagccagcaaaggagtacccattcattcttgatccgtttcaaaaggaagctgtg
ttgtgtctagagaacagccagtctgtgttggtgtctgcccatacgtcagctggaaaaact
gttgtggctgagtatgctatagctatgtcactaaggagcaaacaaagggtgatctacaca
acaccaatcaaagccctcagcaaccagaagtatagggaaatgatggaggagttccaggat
gtaggcttgatgactggggacgtcaccatcaacccaaatgccagctgtctcattatgacc
acagagattttgcgtagtatgttgtaccgtggatcagaggtgatgagagaagtggcttgg
gtcgtgtttgacgagatacattatatgcgggacaaagagaggggtgttgtttgggaggag
actatcatattactaccagacaacgtacattatgttttcttgtctgccacaattccgaat
gcaaggcagtttgcagagtggatctgctatctgcacaaacagccttgccatgttgtgtat
actgaataccgtccaacaccattacaacattacatcttcccagctggaggggatggcatt
catctagtagtggatgaaaacggtgaatttcgtgaagagaatttcaacgcggccatgaat
gtgttaaaagatgctggggatgctgctaaaggtgaccgtcgaggcaggagagggggagtc
aaaggaggtaatgagtcaaactgtttcaaaattgtgaaaatgatcatggagcgaagtttt
gcccctgtcatcgtgttcagctttagcaggaaagaatgtgaagcttatgcactacagatg
tcaaaacttgactttaacacagaggaagaaaaaggcatgatagaagaagtttttaacaat
gccattgatgcattgtcagatgaggataaaaagctgcctcaggtagagcatgttcttcca
ttgttaaagaaaggtgttgggattcatcactccggactcctgcccatcctaaaagaaacc
attgagattctttttgcggaaggactcattaaggccctgtttgccacagagacatttgct
atggggcttaacatgcctgccagaactgtgcttttcaccagctgcaggaaatttgatggt
aaagatttcagatggttaacctctggagaatacatccagatgagtgggcgtgcaggaagg
cgtggccttgatgaccgaggcattgtgatactcatggttgatgaaaagatgagtccttct
gccggtaaactaattgtcaagggtaaagcagatgcactgaacagtgcattccatctgacc
tacaatatggtgttaaacctgcttcgtgtggaggagatcaacccagagtacatgctggag
aggtcctttttccagttccagaattatgcagccataccagaactctatgaaaaattgaag
gagctagaagaaaagtacaatagtctttccattcccaatgaagataatgtgtcctcatac
tacaagatccgtcaacagcttgataacttggggaagaccttgatatcctacatacagaaa
cctcagtatatattaccttttctccaaccaggcagattgatacaggtaaaaaatggtgag
gaagactttggctggggtatggttgtcaactttcagaagaaggcaaatcaatcagatgcc
ccagttgtgggtgagcccagttacgtggtagaagtcctgttacacctgaccaaggatagt
gcccgaagcaatcgcacatctgcggtcaaaccatgtcctccaggagaaaggggagagatg
caggtcgttcctgttttgttgtctttggtaaaggctatcagttcaatccgagtctatttt
ccatcagaccttcgaccagtagacaacagacagagtgtactcaagtccattcaggaagtt
cagaagaggttacctgatggcctgcctttactggatcccgtagaagacatgggaataaag
gagaagggcctaggagatgtggtcaggaaaatcgaagcctttgagcaacgtctttattct
catccactacacaaagatgccaagctaccagagctttatgatcaatattcaaagaaagca
caggttggttctgaaattaaatccctgaagtctgaactgaaaaaaaagaagtcattgctg
cagatggatgaattgaaatgtctgaagcgtgtgttgaggagaatgggttatgccacagcc
tctgatgtgatagaaatgaagggaagagtggcatgtgaaattagcacagctgatgaatta
ctactcacagaactgctgttcaatggtgttttcaatgagctcaatgttcagcaatgctgt
gcccttcttagctgttttgttttccaagagaaggccaatgaaatgcccaagctgaccgag
gctctttctggtcccctaaggataatgcaggacacagccaggaggatagcacgggtgagt
gctgaggccaagattgagttggacgaagagacatacgtggaatcattcaagcctcaaatg
atggatgtggtcaatgcctgggcttcaggggtaacatttggtcaaatctgtaaaatgaca
gatgtatttgaaggcagtattataaggtgtatgaggcggttggaggagactctgagacaa
atggtgcaggcagcaaaagccattgggaacacagagttggaaaataaattctcagaaggg
atacgaaaaatcaagagggacattgtctttgctgccagtttgtacttgtga |
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