Liolophura japonica (common chiton): 135472297
Help
Entry
135472297 CDS
T09976
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03013
Nucleocytoplasmic transport
ljp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135472297
03015 mRNA surveillance pathway
135472297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135472297
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135472297
5.6.2.5 RNA 5'-3' helicase
135472297
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135472297
mRNA cycle factors
Common to processing body (P body) and stress granule
135472297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
AAA_16
DEAD
NAT10_TcmA_helicase
SRP54
nSTAND3
AAA_22
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
135472297
NCBI-ProteinID:
XP_064607811
LinkDB
All DBs
Position
8:complement(17726604..17749922)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTDEPDLLGADTQGSEFDFTDFTLPSQTQSQTQASQLDPDQSQS
QVNGLDISLQNGLDKNFNAINQGVGELTFEEDEEDQFYMKDLPKHACSYCGVHDPASVVF
CNTTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCATLSSLKDMNWDPSQWQPLIQDRQFLPWLVKVPADHEQLRARQ
ITAQQINKLEELWKDNPDAKLEDLEKPGVDEEPQQVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNIVVRWDVGLNKKRIAYFQLPKANEEMKLMHGDELRLRYLGELHKPWSG
VGHVIKIPDNYSDEVAIELKSNAGVPAECTHNFVVDFVWKSTSFDRMQASLKTFAVDETS
VSAYIYHRLLGHEVEDVVIKCSLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVHHLSKQLQGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSVPELQKLQQLKDETGELSSQDEKRYRALKKQCERELLQHADVICCT
CVGAGDPRLAKMQFRCVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSNFPSNIFYEGSLQNGVTAAERVKKGLD
IPWPQAEKPMFFYTTTGQEEISSSGTSYLNRTEAANTEKIATRFLRSGIRPEQIGIITPY
EGQRSYLVQYMQYSGGLNKLLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIVVGNPKVLSKQPLWNHLLTHYKEQKCLVEGPLNNLKESLIQFSKP
RKLINTTNPGGRFMSSTMFDARELMIPGSMYDRSSQVNGGVSYREPLIRTHDQLGFIGPD
RGFASGLNLPVPVGMFMPPLQQPFPTQPMQQGNRGPPRSRGPPGRRQKPPRYSNTQPQGN
PHVNYGSQSQASQDASQPFSQGPLTQGHMSMSQPFQMSQPGLTGLSQPELSQDSYLGDDF
KSQADGMLSQDSTYQGDRLFYASQLSQGPFN
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagacgcatatggaccaagttcacaaaccctaactttcttggacaccgacgag
cccgatttgttgggagcggacacacagggctcagagtttgattttaccgactttacttta
ccatctcagacacagtctcaaacccaagcatctcaactcgacccagatcagagccagagt
caggtcaatgggcttgacatctccttgcagaacggactggataaaaatttcaatgcaatt
aaccagggagttggggagttgacatttgaagaagatgaggaagatcagttttatatgaaa
gatctccccaaacatgcctgttcatactgtggagtgcatgatccagctagtgttgtcttt
tgtaacacaaccaagaagtggttctgtaatggccgaggtaacacatctggcagccacatc
attaatcacttggtgagggccaaggctaaagaagtgacccttcacaaagatgggcccctc
ggggagacagtgctggagtgttacaactgtgggtgtaggaacgtcttcttactgggcttc
atccctgccaaggctgactccgttgttgtgttgttgtgtcgtcagccatgtgccacactc
agcagcctcaaggatatgaactgggatcctagccagtggcagcccctgatccaagaccgg
cagttcttaccgtggctggtcaaggtacctgctgaccatgagcagctgagagcaagacaa
atcactgcacagcagatcaacaagctggaggagctctggaaggacaatcctgatgccaag
ttagaagatttggagaaacccggtgtagatgaggagccccaacaggtgttgttgagatat
gaagatgcgtatcagtaccagaacatctttgggcccttggtgaagctggaagcagactac
gacaagaagttgaaggagtcgcaaacccaggacaatatcgtggtcagatgggacgtggga
ctcaacaaaaagaggattgcttacttccagttgcccaaagctaatgaagagatgaagctg
atgcatggtgatgagttgagactgagatacctgggagaactccacaagccctggtcaggg
gttggtcatgtcatcaagattcctgacaactacagtgatgaggtggcaatagagctgaag
agtaatgcaggagtacctgcggagtgtactcacaactttgtggtggactttgtctggaaa
tctacatcttttgacaggatgcaggcttctctgaagacgtttgctgtggacgagacttcc
gtgtctgcgtacatctaccaccgcctgttaggacatgaggtagaagatgtggtgatcaag
tgctcccttcctaagcggttcagtgccccaggcttacctgagctcaaccactcacaggtg
tacgctgtcaagacagtgcttcagaggcccctcagtctaattcagggaccccctggcaca
ggtaagactgtcacctcagccactattgtacatcatctgtccaaacagctccagggacag
gtgctggtctgtgcaccgtctaacattgctgtggatcagctgacggagaagatacaccgc
actggactgaaggttgtacggctctgtgctaagagcagagaggcaattgattccccagtc
tccttcctggctcttcacaatcagatcaggaacatggacagtgtgcctgagcttcagaaa
ttacaacagctgaaggacgagactggagagttatcctcccaggatgagaagcgatacagg
gccctgaagaagcagtgtgagagggagctgttacagcatgcggatgtgatctgttgtacg
tgtgtgggtgctggagacccaaggctggctaagatgcagttccgatgtgtgctgattgat
gagagcacacaggccacagagccagagtgtatgatccctgttatcttaggctgtagacag
ctgatcctggtgggtgaccactgtcagcttggtccagtggtgatgtgtaagaaggcggct
cgagcaggactctcccagtctctgtttgagcgacttgtcgtgctgggaatccgaccaatc
aggctacaggtgcagtacaggatgcaccccgccctcagtaacttcccctcgaacatcttc
tatgagggatccctgcagaatggtgtcacagcagctgaacgtgtgaagaagggactggat
atcccctggcctcaggcagagaagcctatgtttttctacacaaccacaggacaagaggag
atctccagctctggtacatcctacttgaacagaactgaagctgctaacacagagaagatc
gcaacacgtttcctgcgctctgggatccggcctgagcagattggtatcatcacaccctat
gagggtcagaggtcatatctggtacagtacatgcagtacagtggtggactcaacaagctt
ctgtatcaggagatagaagtggccagtgtggatgccttccagggccgtgagaaagacttc
atcatcttgtcatgtgtccgttctaacgaacatcaagggattggattcttgaatgacccc
aggcgactgaatgtggccttgaccagagctaggtatggcattattgttgttgggaacccc
aaggttctgtccaagcagccattgtggaatcacctgctaacccattacaaggagcagaaa
tgtttggtcgaaggacctctgaacaacctgaaggagagcctcattcagttcagtaaacct
cgcaaactcatcaacaccaccaacccaggtggtcgcttcatgagctccactatgtttgat
gcccgagagctgatgattccgggcagcatgtatgaccgctcctctcaggtgaacggaggg
gtgtcatacagagagccactgatcagaacccacgaccagctagggttcataggaccagac
cgagggtttgccagcgggcttaacctgcccgtgcctgtggggatgttcatgcctccctta
cagcagcccttccctacccagcccatgcagcaaggtaaccgcgggcctcctcgcagcaga
ggaccccctgggcgcaggcaaaagcctcctcgttacagtaacacccagccccagggtaac
ccacatgtgaattacggctcccagagtcaggccagccaggatgcctctcagccgttctca
cagggccctctgacacagggccacatgtcaatgagccagcctttccagatgagtcagcca
gggctaacgggcctttctcagccagaactgtctcaggacagttatctgggggatgacttt
aagtcccaggcggatggtatgctgtcccaggactccacctatcagggagaccgcctgttc
tacgcctctcagctgtcccaggggcccttcaattag
DBGET
integrated database retrieval system
