Liolophura japonica (common chiton): 135473088
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Entry
135473088 CDS
T09976
Name
(RefSeq) DNA polymerase beta-like
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
135473088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135473088
Enzymes [BR:
ljp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
135473088
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
135473088
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
135473088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
DNA_pol_lambd_f
HHH_5
NTP_transf_2
Cdd1
5_3_exonuc
Exo70_N
Motif
Other DBs
NCBI-GeneID:
135473088
NCBI-ProteinID:
XP_064608972
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All DBs
Position
1:45083581..45105555
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AA seq
336 aa
AA seq
DB search
MSKRKAPTSENPNADFCDFLMELANYEKNVNRQMHKYNVYRKAAGLLAKHPTRIKSGEEA
KKLDGIGDKIGKKIDEFIRTGKLEKLEKIHKDDKSMAIGELTKVTGVGPAAAAKFVQEGI
MSIEDLRKHMDKLNHHQQIGLKHFEDFEKRIPRAEMEQLQKIVTDAIKKLDDEYEGRVCG
SFRRGAESSGDIDILLTHPSFTSEKKKMPVLLHNVVKELEGIKFVTDQLSLGDTKFMGVC
RLPKGDGDDEPSYRRIDIRLIPHDQYYCALLYFTGSDQFNKHMRGIALEQGFTLNEYSIR
PMGSTGIPGEPLPVSSEEDIFDYVGMKFKKPKDRNL
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaacgcaaggcgccgacaagtgaaaatcctaatgcagatttttgtgatttcctc
atggaattagcaaactatgaaaaaaatgtgaacaggcaaatgcataagtacaatgtgtac
cggaaagctgcaggactgctggctaaacatcccacaaggatcaagagtggagaggaggcc
aagaaactggatggcattggtgacaaaattggaaagaaaattgatgagttcatcagaact
ggaaagctggagaaacttgaaaagattcataaagatgacaagagtatggctattggtgag
ctgactaaagtcacaggcgttggaccggctgctgctgctaaatttgtccaagaaggaatc
atgtccattgaagatttgaggaagcacatggataaactcaaccatcaccaacaaattggt
ttaaaacattttgaagattttgaaaaacgaattccaagagcagagatggaacaacttcag
aaaatagtcacagatgcgataaagaagctagatgatgaatatgaaggtcgtgtgtgtggc
agcttcaggagaggtgctgaatccagcggtgatattgacatcttgttaactcatcccagc
tttacatcagagaagaaaaaaatgccagttttgttacacaatgttgtgaaggaactggaa
ggcattaagtttgtaaccgatcaactttctctaggtgacaccaaatttatgggtgtatgt
agacttcccaaaggtgatggtgatgatgaaccaagctacagaagaatcgacatcagactg
atccctcacgaccagtattactgtgccctgctgtacttcacgggcagtgaccagtttaac
aagcacatgagaggcattgccctagagcagggattcaccctcaatgagtacagtattaga
cccatgggcagcacgggtattcctggtgaacctttacctgtatccagtgaggaggacata
tttgattacgtaggaatgaagttcaaaaaaccaaaagacagaaatttatga
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