Liolophura japonica (common chiton): 135473237
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Entry
135473237 CDS
T09976
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ljp
Liolophura japonica (common chiton)
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ljp03041
]
135473237
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135473237
Spliceosome [BR:
ljp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135473237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
R3H
Helicase_C
OB_NTP_bind
Ank_2
DEAD
Ank
Ank_5
HA2_N
Ank_4
Ank_3
AAA_19
nSTAND3
AAA_16
AAA_22
ATPase
T2SSE
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
135473237
NCBI-ProteinID:
XP_064609152
LinkDB
All DBs
Position
8:complement(15805711..15837058)
Genome browser
AA seq
1647 aa
AA seq
DB search
MAARGRFVKQPNYAGGHRVSTDDGSRHSNSPFGRFSGRSSQGRSTQNSPFTGQQSSGQRS
NPSPRSYPGQHQDRGPRLTEDVCVGEEVKIGVNLAITRFRNDENVKELEFPSSLTATERA
YIHRLVVSMGLKSKSKGKGTNRYITVSKKTGNQGCSKDAAFQLVGHSRHQIHTLLQRFPL
TNKERQELQPRAERGQFSRELNKTTTGRLNNGVSQVPPKRGESELSSFRETLPIYVQGGE
ILEAINNNPVVLVSGETGSGKTTQVPQLILDDCYAKGKPCRIFCTQPRRIAALTVAERVA
AERGEKIGQTVGYQIRLESKVSPKTLLTFCTNGVLLRTLMGSDNALGTVTHVIVDEVHER
DRFSDFLLISLRDLMGRFRNLKVILMSAALNLQLFVQYFNNCPVVSIPGNLFDVQEYFLE
DVLKWTKYSNKKMQAYLANLGKVEQQQQQLNEWCAYPPVGTETGVSSSDHHMDRNPIGTG
ELGQEKEELEPWLVKEMDDIMSDIWLNGSEEGFSQIFHFVVNDGVSVDYSHSGTTATPLM
TAAARGFTEIVEQLLNLGANVNARASNGWTALDFAKKFSQEDVIELLQAYIAAGEEGDLE
GVSDYAQRPDTSELSQQDRNLLAAYHGCFDDDKVDIELVTALVHKIHLSQPEGAILIFLP
GYDDIVSLRESINEDKRFEHSRYILFVLHSAMQSSDQKRVFRPAPPGVRKIILATNIAET
SITINDVVYVVNSGKVKEKSFDALTGAVMLKSCWISKASAKQRKGRAGRCRPGVCYNMFS
SVRFRNMMEYTMPEIMRYPLQELCLHTKLLTAPHVSVADFLSKAPEAPAFIIIRNAVQLL
KQIDAFDPCEDLTELGHHLTDLPLEPQLGKMVLYSVVLKCLDPVLTIACTLAYKDPFLLP
SQPYQKRAASAARQRFAAGTYSDHMTYLRAFQAWQKARSDGWERAFCEKNFLSSATLEMI
VGMRTQLLGQLRASGFVRARGGGDIRDLNTNSENWAVVKAALSAGCYPNLVRVDRERKVL
VTKTTDKVRIHNTSVMSSLSPASSENVAKMTRILPSDWLIYEEMSHGVRLACARCCTLVS
PITVSLFSGPAKLPSDTLRDPSSAQDFMVCWMPPDNASDSESEDKEDERKASLKLDDWVA
FKLDPEALNLVLNLRQKWHALFFRRMRTPSKPWSQIDEAVLRAVISVLTTEEQAMGLQQP
VGIGQRPETYGLTDNCSKNIFGGASEPFNSGGGRFDYEDYYENRGNNRMRKSPATTPRRS
PNFALCAHYQHQFEPCSISTEGRLMIQQASNQQGEVSAGEILQALGNNSASTSQRGSASS
TPCPSPRPSSPLQAWDKDPGAMSPHPCRFFVMKCQNQKRLDMAISKGTWSSSAYIEKKVA
KAFEGGKTIYLIFSIQGSNHFQGYAKISHLISLKEKNNPATYSGRFGLEWVKRGNVSYQA
TGHFVNSWDKNRSVRDSKDGQELEPNVGETLIRLWDTTPQPAKSSQSPGRHLGAGDGPNQ
GHRGIPGTTKQDPFSGMKPQSPGHVTGQSGDHKRSSQPGEYPQSPASVPIHGSQVFTSPE
GRRHAGVEPSGASPRFVTPVISQSSSGTRGNAPLTILQRGSNASQSQLPHREQLQQQHQQ
QHQTKSMPGSYPNTSPGAYQPSHHRQQ
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgaggacggtttgtcaagcagccgaactatgccggtggacacagagtatct
acggacgacggctcaagacactccaattctccgtttggaagattctctggacgttcatca
caaggcagatctactcagaattctccattcactggacagcaaagctcaggtcagagatca
aatccatccccaaggagttaccctggtcagcatcaagatcgtggacccagactgactgaa
gatgtctgtgttggggaggaggttaagattggggttaacctggccattactcgcttcagg
aatgacgaaaatgtcaaagagcttgaatttccctcttccctgacggctacagagagggcc
tacattcaccgcctagtagtgtccatgggtctgaagagcaaaagtaaaggcaaagggaca
aatcgttacatcactgtttctaagaaaacaggcaatcagggttgtagcaaagatgctgca
tttcagctggtgggccattctcgacatcagattcataccttgctgcagagatttcctctg
acaaataaggaaagacaggagttgcagccacgagcagagagaggacagttttcaagagaa
ttaaacaagacaaccacagggagactcaacaatggagtgtcccaagttccacctaagaga
ggggagtcagaattgtcaagcttcagggagaccttgcccatttatgttcaagggggtgaa
atattggaggctatcaataataatccagttgtgttagtatcaggagagacaggctccggt
aaaaccacacaggttccccagctgatcttggatgactgctatgccaagggtaaaccctgc
aggatattctgtacacaaccccggcgtatcgcagccttgaccgtggcagagcgggtggca
gcagagagaggggagaagattggacagactgtcgggtatcagatccgtcttgaaagcaaa
gtgtccccaaagactttgttgactttctgcactaatggggtactgttacgcacactcatg
ggcagtgacaacgccctgggcacagtcactcatgttattgtggatgaggttcatgagcgg
gacaggttcagtgacttcctcctgatttccctgcgtgacctcatggggaggttcaggaac
ctcaaggtcatcctgatgagtgctgctctcaatctccagctgtttgtccagtatttcaac
aactgccctgttgtgtccatccctggtaatctgtttgatgtacaggagtattttcttgaa
gatgtcctcaaatggactaagtatagtaacaagaagatgcaagcctacttagcaaacctt
ggaaaggttgaacaacaacagcagcagttgaacgagtggtgtgcttaccctcctgttggc
accgagactggagtgtcaagctctgaccatcacatggacaggaatcctataggcacagga
gagctaggtcaggagaaagaggagctagaaccatggcttgtaaaggaaatggatgacatc
atgagtgacatttggctcaatggcagtgaggaaggcttctcacagatcttccactttgtg
gtaaacgatggcgtcagcgttgactacagccactcagggactacagccacacctctgatg
acagctgctgccaggggctttacagagattgtggaacagctcctcaacctgggtgctaat
gtgaatgcacgggcttctaacggctggacggcgctggactttgccaagaaattctcacag
gaggatgtgatagaactacttcaggcatacatagctgcaggggaagagggtgacttggag
ggggtatcggattacgctcaaagaccagacacaagtgaactgtcacaacaagaccgcaac
ctgttggcagcataccatgggtgcttcgatgatgacaaagttgacattgagcttgtaacg
gctttggttcataagatccatttatcacaaccagaaggtgcaattctgatatttctacca
ggatatgatgacatagtatctctcagagagtccataaatgaggacaaacgttttgagcat
tcaaggtacattttgtttgtgttgcactctgccatgcagtcttcagaccagaaacgtgta
tttagacctgctcctcctggggtgcgcaaaatcatcctggccactaacatagcagagaca
agtatcaccatcaatgatgtggtgtatgtggtgaactctggcaaagtcaaagagaaatca
tttgatgccttaactggtgctgtgatgctgaaaagctgctggatttctaaggccagtgcc
aaacaaaggaagggcagggctgggagatgtcgtccgggggtgtgttataacatgttcagc
agtgtccggtttcgcaacatgatggagtacacaatgcctgaaatcatgagatatccatta
caggagctgtgtctacacaccaagttgctgacagctccacatgtctctgtggctgacttc
ctcagtaaagccccagaagccccggcattcatcatcatcagaaacgcagtgcaacttctc
aagcaaatagatgcatttgatccatgtgaagatctgacagagttgggccaccacctgaca
gacctgcctctggagcctcagctgggcaagatggtgctctactctgtggtgctcaagtgt
ctggaccctgtccttaccatagcctgtaccctggcttacaaggatccattcctcttacca
agccaaccataccaaaagagagcagcatcagcagccagacaacggtttgctgctggcact
tacagcgatcacatgacatacctgagggcttttcaggcctggcagaaggctcgctctgat
ggctgggagagggcattctgtgagaaaaactttctctcttctgctactttggagatgata
gtaggaatgaggacacagctgttgggtcagctgagggcgtcagggtttgtgagggctcgg
ggaggaggtgacatacgggacctgaacacaaactctgagaactgggcagtggtgaaggca
gccctctctgctggctgctaccccaacctggtcagggtggacagggagaggaaagtactg
gtcactaagacaacagacaaagttaggattcacaacacctctgtcatgtcaagtttaagt
cctgcctcctcagagaatgtggctaagatgacgcgtatactaccttctgattggctgata
tatgaagagatgagtcacggtgtgaggctggcatgtgcgcgctgctgtaccctggtgtca
cccataactgtgtcactcttctcgggtccggctaagctgccttctgacacactgagagat
ccctccagtgcacaagatttcatggtgtgctggatgccccctgacaatgccagtgacagt
gagagtgaggataaagaggatgagaggaaagcttccctgaaacttgatgactgggtggcc
ttcaagcttgaccctgaggctctgaaccttgttcttaacctacgacagaagtggcatgct
ttgttcttcagacggatgagaacgccatctaaaccctggtcccagattgatgaggctgtg
ctgcgtgctgttataagtgtgctgacaacagaagaacaagccatgggtttacagcaaccg
gtcggcattggccagagacccgagacctatgggctaacagacaattgcagtaaaaacatt
tttggtggagcttctgagccattcaactctggtggagggaggtttgattatgaggattac
tatgagaacaggggaaataaccgtatgaggaaaagtccggcaacaacccccaggaggtcc
ccaaatttcgcactttgtgctcattatcagcaccagtttgaaccatgcagtatttcaacc
gagggccgactgatgatacagcaggcttcaaatcagcagggggaagtaagtgcgggggaa
attctccaggctctgggtaacaatagtgcttcgaccagtcagagaggaagtgcctctagt
accccatgccccagcccgaggccatcctctccattacaggcctgggacaaggacccgggg
gccatgtcgccccatccctgtcgcttctttgtcatgaagtgtcagaatcagaagagacta
gatatggccatcagtaaaggcacttggtcatcgtcagcttacattgaaaagaaagtggcc
aaagcctttgagggtgggaagacgatatacctgatcttctctatccagggtagtaaccac
ttccagggctatgccaaaataagtcatctcataagccttaaggagaagaacaatccagca
acatacagtggaaggtttggacttgaatgggtgaaaaggggcaatgtctcgtatcaagca
acaggccactttgtgaactcttgggataagaacaggagtgtcagagacagcaaggatggt
caggaattggagcctaatgttggtgagaccctcataagattgtgggatacgacacctcag
ccagctaaaagttcccagtctccagggagacatctgggggcaggagatggccctaaccag
ggacatagaggcatcccaggtacaactaaacaggatccattctcaggtatgaagcctcag
tcccctgggcacgtgacaggacagtctggagatcacaagcgcagctcccaacctggtgag
taccctcagtccccagcctctgtccccatccacggctcccaggtgtttactagccctgag
gggagacgtcatgctggggtggagccatcaggtgctagccccaggtttgtcacacctgta
atctcacaatcctcatcaggcacccgtggtaatgccccgctgacgatactacagagaggt
tctaatgccagccagagtcagctgcctcacagagaacaactacaacaacagcaccagcag
cagcatcaaaccaaatctatgccgggttcctaccctaacactagccctggtgcctaccaa
ccctcacatcacaggcaacagtag
DBGET
integrated database retrieval system
