Liolophura japonica (common chiton): 135475602
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Entry
135475602 CDS
T09976
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135475602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135475602
03012 Translation factors [BR:
ljp03012
]
135475602
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135475602
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
135475602
Translation factors [BR:
ljp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
135475602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
AAA_23
Cas3-like_C_2
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
135475602
NCBI-ProteinID:
XP_064611599
LinkDB
All DBs
Position
9:11965109..11995720
Genome browser
AA seq
1054 aa
AA seq
DB search
MLAFSFRGWRGSRRGYTRGHDRGEGSGGHSGRGRGHGPPPGLKGREIGMWYARRGKVRKE
EKELAERQFVPLDDHREQHIRRLLHDIQTSESVPPQPQRSYKDITSDCSKSYSGSFPQGT
TRSSKPEVADHRSVPDSWWDDKEDMELLADSDKTQSQSSIKREDVQTAAIESQHKAETSE
MKTENQEDVDMEADSEISKVYRFIKDEDFIPLNTGSEDIEMDQFTITRDPYIDQKLLKDI
EESRQSSRYQRMLEFRKKLPSFSMREKILEVVCGSQVTVISGETGCGKTTQVAQFILDDF
IDKGKGSACHVVCTQPRRISAVSVAERVADERAEACGNKNSVGYQIRLESKMPRAQGSIL
YCTTGILLKWLESDPLLLRASHIVLDEIHERDLLSDFLIIILKDILPRRSDLKLVLMSAT
LNAEMFSQYFGNCPMLNIPGFTYPVQELYLEDILEVTSYQPNMASQPQRRSYSRKAREMR
LQEDDEKMELEDWFYSLKGNYSFSTLEALMNMDYKKIDLDLIMTLIDHICTHKGDGAILI
FVPGWDEISKLNDQLSRSPKYCSDWFCIIPLHSLMPTANQRKVFDRPPQGVRKIVIATNI
AETSITIDDVVYVIDCGKIKVKNFVPESNLTTLEPHWVSVANARQRRGRAGRVQPGECYH
MFTRLKLSQMEEYLKPEILRTRLEEICLQIKLLKLGKIEPFISKALEPPSMEALHSALIN
LEELNALDHEENLLPLGYHLARMPVDPHVGKMILFGAMFCCLDPVLTVAASLGFKDAFTI
PLGKEKEADRRRKELSKDSKSDHILLINAFQGWERAKSRGTDRQYCWDNFLSANTLRMLG
DMKKQFMELLKDLGFVNSRSPKEETSNINSGNYGLIKAVICAGLYPNVAKISKSPNPHSK
GFRPTLFCTKTDRRVTLHPKSVNANEKVFESKWFIFHQKLKTNSINLHDCSMVAPYPLLF
FGGDIDIRRDREQDCVAVDDWILFRASPSIAKLVIDLRRELDRVLEEKISKPGPTTWDKK
TKEGAVMRAIVDLISMEDDLYLQGGSSGGGANWR
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgttggcattcagcttcaggggctggagaggttcaaggagagggtataccaggggtcat
gacagaggtgaggggtcagggggtcattcaggaagaggtcgtggccatgggccacctcca
gggctgaagggaagggagattggtatgtggtacgccaggcgtgggaaagttcgcaaggaa
gaaaaagaactagcagagaggcagtttgtcccgctggatgaccacagggaacaacatatc
cgccgacttttacacgatattcagacttcagaatctgttcctcctcagccacaaaggtcc
tataaagatatcacttccgactgcagcaaatcatactcaggcagttttcctcaaggtaca
actaggagttcaaaacctgaggtggccgatcacaggtctgtcccagactcctggtgggat
gataaagaagacatggaactattggctgatagtgacaaaacccaaagccagtcaagcata
aagagagaagatgtgcaaactgcagcaatagaatcacagcacaaagctgaaacatctgag
atgaagacagaaaaccaagaagatgtggacatggaggctgactctgaaatctccaaagtt
tacagatttatcaaagacgaagacttcatacctctgaacactggttcagaggatatagaa
atggaccagtttactatcacaagagacccatatatcgaccagaaattgttgaaggatatt
gaagaaagccgacagagctctcgttatcagagaatgttggagttcaggaaaaagcttcca
tcattctccatgagagagaaaattttggaagttgtttgtggaagccaggtaactgtgatc
agtggagaaacagggtgtgggaaaaccactcaggtagcacagttcattctggatgatttc
atagacaaggggaaggggtctgcctgccatgttgtatgtacccagcccaggagaatcagt
gccgtctctgtggctgagcgtgtagctgatgagagagccgaagcctgtggtaacaaaaac
agtgttggctatcagatcagactggaaagtaagatgccacgagcacaaggctctatactg
tactgcacaacgggtattctgctgaagtggctggagagtgatccactgcttctgcgagca
agtcacattgtgctggatgagatccacgagagagatttgctgtctgacttcctcatcatc
attctcaaggacatccttccgcggcgatcagacttgaaacttgttcttatgagcgctact
ctgaatgctgagatgttctcacaatacttcggtaactgtcccatgctgaacatcccaggc
tttacttatcctgtacaagagctgtatttggaagacatcttggaagtcaccagctaccaa
cccaacatggcatctcaaccacaacggaggtcatatagcagaaaggcgagagaaatgcgt
ctgcaggaagacgatgagaagatggagcttgaggactggttttattccttaaaagggaat
tattctttcagcaccctggaggcattgatgaacatggattacaagaagattgatttagat
ctgatcatgacacttattgatcatatctgtacacataaaggggatggggcaatcctgatc
tttgttcctggttgggatgagatcagtaaactgaatgatcaactaagcaggagtccaaaa
tattgctcagattggttttgcatcatacctttacattcactgatgccaacagctaatcag
agaaaagtatttgaccggccgccgcaaggtgtaagaaaaattgtcatagccacgaacatt
gctgagaccagtatcaccatcgatgatgttgtctatgtaatagactgtgggaaaataaag
gtgaagaattttgtgccggagtctaacctgacaacgctggagcctcactgggtatctgtc
gctaatgctcgtcagaggcggggcagggcaggcagggtacagcctggagagtgttatcac
atgttcaccagactgaaactctcacagatggaggaatatctgaaacctgagatactgaga
accaggctggaggaaatttgtctacagataaagctattgaagctgggtaaaattgaaccc
ttcatcagtaaagccttggaaccaccatctatggaagctcttcactctgccctgatcaat
cttgaggagctgaatgccttggaccatgaggagaacctgttacccctggggtaccacctt
gctcgtatgcccgtcgacccccatgtgggcaagatgattctgtttggggcaatgttctgt
tgcttggaccctgtattgaccgtggctgccagtctgggttttaaggatgccttcacgatt
ccactgggcaaagagaaggaagcagatagaaggagaaaagagctgtccaaagacagtaaa
agtgatcacatcctcctcattaatgcttttcagggttgggagagggcgaaatcgaggggg
acagatcgccagtactgctgggacaacttcctgtcagctaacacattacgaatgcttggt
gacatgaagaaacagtttatggagcttctgaaggatttaggctttgtaaatagtcgtagt
cctaaagaagaaaccagcaatattaactcaggtaattatggcctaattaaggctgtgatt
tgtgctggactctacccaaatgtggccaaaatctcaaagtctcccaatcctcattctaaa
ggcttcagaccaacacttttttgtaccaaaactgacagaagagttactctccatcctaaa
tctgtaaatgccaatgagaaagtgtttgaatcaaaatggttcatatttcatcaaaagttg
aaaacaaattcgataaaccttcatgactgctcgatggtagcaccttaccctctcctgttc
tttgggggtgacattgacatccgcagggaccgagaacaagactgcgttgcagtggacgac
tggatactgttcagagcttcacctagcatagccaagcttgtcattgacttaagacgtgaa
ctcgaccgtgtgctggaagaaaagatttctaaaccaggcccaacaacatgggataaaaag
actaaagagggagctgtgatgagggcgattgttgacctgatctccatggaggatgatctc
tatctccagggagggtcaagtggagggggcgccaactggagataa
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