Liolophura japonica (common chiton): 135477416
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Entry
135477416 CDS
T09976
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like isoform X1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03022
Basal transcription factors
ljp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135477416
09124 Replication and repair
03420 Nucleotide excision repair
135477416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljp03021
]
135477416
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135477416
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
135477416
Transcription machinery [BR:
ljp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135477416
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135477416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_34
Oberon_cc
Motif
Other DBs
NCBI-GeneID:
135477416
NCBI-ProteinID:
XP_064613580
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Position
11:complement(16440981..16481919)
Genome browser
AA seq
785 aa
AA seq
DB search
MGKRDRKDKEERKSKKVRKEDLDVEEDDTMDAANVEGSSLPSAATRECGQESKEDEFGAK
DYRAILSLKLDHKSRPIWVAPDGHIFLESFSPVYKHAHDFLITIAEPVCRPKHIHEYKLT
SYSLYAAVSVGLQTSDIIEYLRRLSKTSVPDGIVEFIKLCTLSYGKVKLVLKQNRYFVES
QYPEVLQKLLKDPVIQECRLRESQADGEEEEFVVDQLTGKSALKLNKPAPGQAGDPKAGS
STEVATEDVNQVPDDITNYYDKLDREDEDDMESLKTVSFEVKQESIEDIQKRCIELEYPL
LAEYDFRNDTRNPDINVDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGV
TAACTVRKRCLVLCNSGVSVEQWKSQFKMWSTADDSIICRFTSGAKDKPLDSSICISTYS
MLAHSTKRSWEAEQLMSWMRSKEWGLMLLDEVQTIPAKMFRRVLTIVQAHCKLGLTATLV
REDDKIADLNFLIGPKLYEANWMELQNKGYIAKVQCSEVWCPMTAEFYREYLLMKSQKKL
LLVVMNPNKFRACQFLIRYHERRNDKIIVFSDNVFALKNYALKLNKPFLYGPTRQEERLQ
ILQNFQHNPKVNTIFVSKVADTSFDLPEANVLIQVSAHGGSRRQEAQRLGRILRAKKGSV
AEEYNAYFYSLVSQDTQEMHYSLKRQRFLVNQGYSYKVITKLAGMEEEDLALGTKEEQGQ
LLQQVLAASDMDAEEELIPGEGTGKGKAQFQRRTGNMSSMSGADDAIYMEYRNKAKHPLF
KRFKR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggggaagcgagacagaaaagataaagaagagcgaaagtctaaaaaagtccgtaaagag
gatttggatgttgaagaagatgacactatggatgctgcaaatgtggaagggagtagtctc
ccttctgcggcaactcgtgaatgtggccaggaatcaaaagaagatgagtttggagcgaag
gattacagggccatcctttctctgaagttggaccacaagtcccgacccatctgggtggca
cctgatggacacattttcctggagtcgttttctcctgtgtacaagcacgctcatgatttt
ctcatcaccatcgctgagccggtgtgtcggcctaagcatatccatgagtacaagctgaca
tcgtattcactgtatgcagccgtctcagtaggtctgcagaccagtgacatcatcgagtac
ctgagacgcctcagtaagacatctgtacctgatgggatcgtggaattcattaagctgtgt
actcttagttatggcaaggtcaagttggtgctgaagcaaaaccgatactttgtggagagc
caatacccagaagttctacagaaactgttgaaggatccagtcatccaagaatgtcgtctg
agagaaagtcaggctgatggggaagaggaggagtttgtcgtggatcagctgactgggaag
tcagcgctcaagctgaacaagccggccccgggccaggcgggcgacccaaaggcaggctca
tcaactgaggtagccactgaagatgtgaaccaagtccccgatgacatcactaactattac
gacaagctggaccgagaagatgaggacgatatggaatctctgaaaacggtgtcgtttgag
gtgaagcaggagagcattgaggatatacagaaacgatgcatcgaactggagtacccattg
ttagcggaatatgacttcagaaatgatactcggaatccagacatcaatgtagatctgaaa
ccatccacagtgctgagaccttaccaggagaaaagcctgaggaagatgtttgggaatggg
cgggcgaggtcaggggtcatcgtgctgccctgtggtgctggtaagaccctggtgggggtc
acagccgcctgtacagtcaggaagcgctgccttgttctctgtaactcaggtgtgtcagta
gaacagtggaaatctcagtttaagatgtggtcaactgcagatgacagcattatctgtagg
tttacttcaggggctaaggacaaacctctcgactcctcaatttgtatcagcacctactcc
atgttggctcactcgaccaagcgctcgtgggaggcagaacagctgatgagctggatgagg
agtaaggagtggggactcatgctgctcgatgaagtgcagacgataccagccaagatgttc
cgccgggtcttgaccattgtccaggctcattgtaagctgggactaactgccacactggtc
agagaggacgacaagattgctgacctcaactttctaattggtcctaaactctacgaggca
aattggatggagctgcagaacaaaggctacattgccaaggtccagtgctcggaggtctgg
tgtccgatgactgcagagttttacagagaatacctcctcatgaagagtcagaaaaaactg
ctgttggttgtgatgaacccaaacaagttccgagcttgccagttcttgattcgttatcac
gagaggagaaatgacaagataatcgtcttctccgacaacgtgttcgctctcaaaaactac
gcccttaaattaaacaaacccttcttgtacggccctaccagacaggaagaacggcttcag
atcttacagaactttcagcataatcctaaagtcaacaccatctttgtgtctaaggtggct
gacacctcctttgacttgcctgaagctaacgtgcttatccaggtgtctgctcatggaggg
tcacgacggcaagaagcccagaggttagggcgcatcctccgtgccaagaaaggctctgtg
gcggaggaatacaacgcctacttctactcgctggtctctcaggacacccaggaaatgcac
tactccctcaagcgtcagcgcttcctcgtcaaccaaggttacagctacaaggtcatcacc
aaactggccgggatggaagaggaggacttagccctgggtactaaggaggagcagggtcag
ttgttacagcaggtcctggctgccagtgacatggacgcagaggaggagttgattccgggg
gaggggacgggcaagggcaaggcacagtttcagaggcgaactggcaacatgagctcaatg
tcaggagcagacgatgctatctatatggagtataggaacaaggcgaaacatccgctgttc
aagagattcaaacgatga
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