Liolophura japonica (common chiton): 135478226
Help
Entry
135478226 CDS
T09976
Name
(RefSeq) LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135478226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135478226
Enzymes [BR:
ljp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
135478226
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135478226
mRNA degradation factors
3'-5' decay
Pan complex
135478226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Birna_VP5
eIF2A
WD40_like
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
135478226
NCBI-ProteinID:
XP_064614568
LinkDB
All DBs
Position
11:24589954..24628384
Genome browser
AA seq
1205 aa
AA seq
DB search
MAALGHMDPSLYDQGETTGLEGEYHELHSIMVDGGDHFGVSALAFDTQELLWMGNQGGHV
TSYYGLHLEKHASFQAHPHGDDIRQLICHEMGILSLSKNQLRLTERRGVRVFEYSAEEMH
EMQCMLQMSPTSVMMGGHQTKVIEVDLQKGQEIRQVDVEEPGCAIFRMSTKFLCGGDTSG
KVTLFDPNTMIAEHVLEAHSGTLSDFDLHGNLLVTAGFSNRMGSLNVDRFLMVYDLRTMR
AMAPTQVIIDPMFLRFVPTFSNRLAVVSQTGQFQLVEATAMTAASMMLYQIHTHGGLINT
FDISSSCQTMAFGDSTGYLHLFGNTDQPVFNSFPEPTEFVHPPDPHQPIHINDELTPLSI
IPMQYPTQGTLLSDWPHYLCQKVYRKPKPVDSEILRSMKIYHNVGYAPNPGNKRRNQVQY
KLNENNKHRSRKSSVPESPMGRGDDPFIVVPKRYRRVEIKYSRLGVEDFDFRHYNKTNFA
GLETHIPNAYCNSMLQVLYFIEPLRVSLLNHMCAKEFCLACELGYLFHMLDKQKGQTCQA
SNFLRVFRTIPEAAALGLVLGDAEESMGKFNLSRLIQSWQRFLHQQIHSETCPKVPPDLP
PVPSDPDRIPPEEKPPEGEEEQGESTPETETDTEEAPVPENKKAEGSVIKELFSIPTLTM
LRCRCGHEVQRETESTLLTLSYPDCSPPGPGMDPQQISFSQVLQHSMVSEQSTQAWCNIC
DKYQPHIQSKAVKSLPDVLALNCEIENQRDLEFWKIQQRFIKSPEEEKSDTGPRESTPLS
KMCRYGAHCARQDCRFRHPAGEGEGDGESFLDLSRFSDEDCFEPSWVPLGLKISQTDEGQ
INIEEIADDESMDPLQAETSNYYEIFASVSHVKDSKTGGNLVACIKVGERYHQRKENVTC
TQWYLFNDFSITPIEKLEGCHFNLEWKVPSVIYFIRRDINRYYNLQVQNPITSDVLFNDT
SLVNAKRRRVTMTPLSPDEVPKENDIIGLDAEFVSLNQEESELRSDGTRSTIKPSHLAVA
RISCIRGSGELAGEPFIDDYIATQEQVVDYLTQFSGIKPGDLDPNVSTKYLTNLKSTYNK
LRYLVDQGVIFVGHGLKKDFRVINIVVPKDHILDTVELFQLPRQRMISLKFLAWYFLKLK
IQSFTHDSVEDARTALQLYEKYQEMSQEGMDTVRARIKEMYEFGRKVQWKIPEVEEEADS
QLAEL
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgctgggtcacatggacccgtcgttgtatgatcagggggagaccactgggctg
gaaggcgagtaccacgagctgcatagtatcatggttgatggaggggatcattttggggta
tcagctctggccttcgacacccaggagctcctttggatgggcaaccaggggggtcatgtg
acatcgtattatggtctacacctggaaaaacatgcatcattccaggctcatccccatggc
gatgacattcgtcagctcatctgtcatgaaatgggcattctgtccttgtccaaaaaccaa
ctgaggttgacagaaagacgaggagtcagagtgtttgaatattcagctgaggaaatgcat
gagatgcagtgtatgttacagatgagtcccacctctgtcatgatgggaggtcaccaaaca
aaagttatagaggtggaccttcagaaaggccaggaaatccgacaggtggatgtggaagag
ccaggctgtgctatattccgcatgtccacaaagtttctctgtggcggagacaccagtggc
aaggtgactttgtttgaccccaacacaatgatagcagaacatgtcctggaggctcactca
ggcacgctgtctgattttgatctccatggcaacctgctcgtgactgctggattttctaac
agaatgggcagtctgaatgtagaccgtttcctgatggtgtatgatcttaggacgatgaga
gctatggccccaacacaggtcatcattgaccccatgttccttcgttttgttcccaccttc
tccaataggctggcagttgtatcacagacaggccagttccagcttgtcgaagccactgcc
atgacggcagcttccatgatgttgtaccagattcatacacacggaggcctcatcaacaca
tttgacatctcatccagctgtcaaaccatggcctttggagacagcacaggttacttgcat
ctgtttgggaacacagaccagcccgttttcaattccttccctgagcccacagagtttgtg
cacccgcctgatccacatcagccaatccacatcaatgatgagttaactcccctgtctatc
attcccatgcagtaccccacccagggcacactgctgtctgattggccacattacctgtgt
cagaaagtgtacagaaaacctaaaccagtcgacagtgagattttaaggtcgatgaagatc
taccacaatgttggttacgctccgaacccaggcaacaaacgtcggaaccaagtgcaatac
aaactaaatgagaacaacaaacatcgaagtcgcaaatctagtgtgccagagtccccgatg
ggaaggggggatgacccatttattgttgttccaaagcgttacagacgagttgagatcaag
tattcccgactcggcgtagaggattttgacttccgtcattataacaagacaaactttgcg
ggtctggagactcacattccaaacgcatattgcaattccatgttacaggtgctatacttt
attgaaccgttgcgggtctccttgttgaaccacatgtgtgccaaggagttctgtctggcc
tgtgagcttggctacctcttccacatgctagacaagcagaagggacagacctgtcaggct
agtaactttctacgcgtgttccggacaatcccggaggctgctgcgctgggattggtcctt
ggggatgctgaggagtcgatggggaagttcaacctgtcccggctaatccagagctggcag
agattcctacatcaacagatccactcagaaacgtgcccaaaggttccgcctgacttgcca
cctgtgccctctgaccctgaccgtattccacctgaggagaaaccaccagagggggaggag
gaacaaggggagagcactccggagactgagacagacactgaggaagcaccagtccctgag
aataagaaagctgaaggctctgtcatcaaggaactgttcagtatccctacattgacaatg
ttgagatgtcgctgcggacatgaggtgcagagagagacagaatcaacgctgctaaccctg
tcctatcctgactgttcacctccagggccagggatggatccacagcagatcagtttttct
caggtgttacaacacagtatggtgtcagaacagagtacccaggcttggtgtaacatttgt
gacaagtaccaacctcatatccagtctaaagctgtcaagtctttacctgacgtcttggct
ttgaattgtgagatcgaaaaccagcgagatttggaattctggaaaatacagcaaaggttt
ataaagagcccagaagaggagaaaagcgacacagggccaagggagtccactccgctgtca
aagatgtgtcgttatggggcacactgtgcccgacaggactgccggttcagacatccagct
ggggagggcgagggggatggggagagtttcttggacctgagtcggttcagtgatgaggac
tgttttgagcccagttgggttcccctggggctgaagatttcccaaactgatgagggtcag
atcaacattgaagagattgccgatgatgaatcaatggatccattacaagcagagacatca
aactattatgagatttttgccagcgtgtcacatgtgaaggactcaaagactgggggtaat
ttggtggcctgcatcaaggtgggagagagatatcaccagcggaaagagaatgtcacctgt
acacagtggtacctgtttaatgacttctccatcacacctatagaaaagttagaaggctgc
cattttaacctggaatggaaggttccgtctgtgatttacttcattcgacgcgacatcaac
aggtattacaatcttcaagtacaaaatcccatcacatcagacgtgttatttaatgacaca
tcattggtcaacgccaaaaggaggcgtgttaccatgactcccctaagccctgatgaagtc
ccgaaagaaaacgatatcatcgggctggatgcagaatttgtgtcacttaatcaggaggag
tctgagctaaggagtgatgggactcgctcaaccataaaaccctcccacctggctgtggcc
aggatatcctgtatcagggggtcaggtgagttggcaggtgagccatttattgatgattac
atcgctacacaagagcaggtggtagattacttgacacagttttctgggataaagcctggt
gaccttgaccctaatgtgtccaccaaatacctgacaaatctcaagtccacgtacaacaag
ctgcgttacctcgtggaccagggagtcatctttgtgggccacggccttaagaaggacttc
agagtcatcaacattgtggtgccaaaagaccatatcctggacactgtggaacttttccag
ctcccgcgccagaggatgatctctctcaagttccttgcctggtacttcctgaaactaaag
atccagtcgttcacacatgattctgtggaggacgcccgcacagcgctgcagctgtacgag
aagtaccaggagatgtcgcaggaagggatggacacggttcgggcgcgcatcaaggagatg
tacgagtttggccgcaaagttcagtggaagattccagaggtggaggaagaggcagattcc
cagctggcagaattgtga
DBGET
integrated database retrieval system
