Liolophura japonica (common chiton): 135479752
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Entry
135479752 CDS
T09976
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp04382
Cornified envelope formation
ljp04512
ECM-receptor interaction
ljp04518
Integrin signaling
ljp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135479752
04518 Integrin signaling
135479752
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135479752
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
135479752
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ljp04147
]
135479752
00536 Glycosaminoglycan binding proteins [BR:
ljp00536
]
135479752
Exosome [BR:
ljp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
135479752
Glycosaminoglycan binding proteins [BR:
ljp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135479752
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
135479752
NCBI-ProteinID:
XP_064615727
LinkDB
All DBs
Position
12:complement(18406468..18457176)
Genome browser
AA seq
1641 aa
AA seq
DB search
MGPFRVLPSPFFLKTTSFRLTLVHGQGYRLGVGTFVPQQSLIAFLLLILVYVNAVYGASC
GGCAGTACICKGDRGPQGATGLPGLQGPPGLPGFPGPEGPFGVKGFKGDSGDAGGRGPKG
LRGAQGLPGFTGVPGIPGQLGLEGRVGPRGIPGCNGTKGYAGRPGKPGLDGYPGPPGYPG
PDGIKGPPGEPNGLAYGLKGEPGLLGRDGIDGPQGTPGQPGERGDQGEAGPRGQPGPPGG
PGLKGMSGNTVKGIKGIRGIAGPAGPPGEVVTIISGVKQAEITESGPPGEKGYTGDPGLE
GLPGLPGPPGNDGLPGLVGPKGGKGNPGPPGRLGKRGKEGNPGPFGAKGMIGEKGFPGIP
GRIGLKGMRGDEGFPGRPGLVGLPGLPGNVTGGVSLIPGFPGLQGPDGIPGPKGEPGRDG
GIGRPGSPGLPGLPGRDGLPGSRGVPGYSQKGDRGEPGFPGPDGTPGTIGFPGQAGLPGE
KGRPGETIVGPPGEPGRPGQDGLPGLRGLPGDPGYPGAKGLPGKLISTIQLEGFPGQPGD
RGFPGDNAPDGLPGLPGPKGLRGDDCGRCADGVPGTRGDVGNEGLPGRAGFIGPDGFMGL
KGEPGLPGLPGPDGIPGPPGLPGRDGSRGYRGQKGERGDYEIPPDFKGQKGEPGFPGLEG
RDGSRGPVGNRGSPGEPGLPGFDGEPGLPGLDGLDGIPGVDGIPGPKGLPGDPSYGLPGR
KGEPGLPGLDGLPGAPGFKGMRGEAALPPLGYEYPGEPGDRGPFGPNGMDGLPGLPGLAG
DPGLPGQDGFPGPKGMRGTDGYPGEPGRRGPDGSKGFPGIPGDPGLPGLDGLPGMRGEDG
LPGQPGRQGDRGEPGRSLTLGLPGLPGEIGPTGMPGTPGSDGYQGMPGRPGQDGFPGMPG
LDGVDGIPGEPGAPGLDGDPGEPGRPGLPGPRGPSGDSGLPGLAGQRGTDGLPGAPGLQG
PTGDPGLPGLPGLDGEDGIPGRIGEPGLPGLPGLPGLKGDMGDAGRPGTPGRDGLDGLPG
LDGRKGGSGDPGLRGLDGRPGIPGRKGGRGLDGLPGGRGLPGDPGYYAAKGEPGLPGLQG
VPGLRGRPGEDGLPGRKGEPGVPGPSLPGRVGEKGYPGEPGRDGFPGSPGFKGSVGDMGL
PGLDGLPGESGRDGFPGEPGRDGIPGLKGPDGEPGLPGLPGVGGERGTSGLPGVPGRKGE
PGDAGQFGLPGLPGPVGRPGEDGLPGRMGNDGFPGQKGEPGPSGPDGFPGEQGGRGEDGF
PGNPGDRGRDGDPGLPGRSGSPGFKGLPGDTGYVGLPGIPGEDAPFDQPGERGEDGIPGV
SGLPGRTGQPGDPGFDGRPGRKGEPGVPGVGLKGIKGEPGLSGLPGLPGIDGYPGSPGEP
GLPGLPGFKGDPGPNGPPGPDGRPGLPGPDGPPGLNGLPGLGGFKGEPGYPGLPGLDGMK
GLPGDNGFPGNAGRDGPRGDPGVPGRKGEPGYLQRPVELPPQKGEPGDVGFPGAPGFPGP
VGESGLPGVDGMRGTDGRPGLYGLPGISGRKGERGPFGREGLRGLPGLEGPPGFQGSPGQ
PGPSGGAYGFHFARHSQTSEVPNCPENTVRLWTGYSLLFVQGNSRAAGQDLGNSGSCLRR
FHTMPFMFCNINNVVHSILEK
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggggcctttccgagttctcccctcaccgttcttcttgaagactacgagcttcagactt
acgttagtacacgggcaaggataccgacttggggtagggacgttcgttccccaacagtcg
ctcattgccttcctcttgctcattctggtctatgttaacgccgtctacggagcgtcttgt
ggaggttgtgcaggaactgcgtgtatatgtaaaggggatagaggcccacagggtgccact
ggtctgccaggtcttcagggcccacctggcttacctggattcccagggccggagggacct
tttggggtaaaaggattcaaaggtgatagtggcgatgctggaggacgaggtcctaaagga
ctaagaggtgctcaaggtctgcctggatttactggtgtgcctggtatcccaggtcagctt
ggcctcgaaggtcgtgtgggaccccgtgggattccaggttgtaacggtacaaagggttat
gccggtcgcccaggtaaacctggtttagatggttatcctggcccccctggttacccaggt
cctgatggtatcaagggtcccccaggagaaccaaacgggctggcgtatgggctgaaggga
gaaccaggtttgctaggacgagatggaattgatggacctcaaggcacacctggacagcca
ggtgagagaggagaccagggggaggctggacccaggggacaaccgggtcctcctgggggt
ccgggcctcaaagggatgagtggtaacactgtgaagggcatcaaaggtattcggggtatt
gctggtccggcgggtcccccaggggaagtggtgaccatcatatctggggtcaagcaggcg
gagatcacagaaagcggcccacccggagaaaagggttacactggtgacccgggactggaa
ggactgccggggttaccgggcccacctggaaatgatggtctaccaggtctagttgggcca
aagggtggtaagggaaaccctggtcctcccggcagactgggtaagcgcggaaaagaagga
aaccctggaccttttggtgccaagggtatgataggagaaaagggcttcccaggcatccca
ggacggataggtctcaagggtatgaggggagatgaagggtttcctggacgtccaggtctc
gtaggtttaccaggtttacctggaaacgtgacaggtggagtgagtttaattcctggtttc
ccaggattacaaggtcctgacggcattcctggaccaaagggtgaaccaggtcgagatggt
ggcatcggtaggccgggttcccctggcttacctggccttccagggcgtgacggactgccc
ggcagtcgtggtgtacctgggtactcccagaaaggtgatcgaggagagccaggtttccca
ggccctgatggtaccccaggtacaataggcttcccaggacaggcaggtctgccaggagag
aaaggtcgcccaggggagactatcgttgggccgccaggtgagcctggtcgtccagggcag
gatggcttgccaggtctgcgcgggctgccaggtgacccaggatatccgggagccaagggt
ttgccggggaaactcatcagcaccatccaattagagggttttccaggacagccaggtgat
aggggcttccccggggataatgctcctgacggccttccaggtctgccgggacctaaaggt
ttgcgtggagacgactgtggacgatgtgctgatggcgttccagggacgagaggtgacgtg
ggtaacgaagggctgccaggccgtgcgggtttcatcgggcctgatggtttcatgggtctg
aagggagaacctggtttacctggcttacctggacctgatggcattcctggcccacctgga
ttaccgggccgtgatggctcacgaggctacagaggccagaagggagagagaggtgactat
gagattccaccagacttcaaagggcagaagggtgaacctggtttccctggtttagaaggt
cgggatggttcaagaggccccgtgggtaacagaggatccccaggggaacctggactgcca
ggctttgatggtgagccaggtctgcccggtctggatgggttggatggtatccctggagtc
gacggcatccctggacctaaaggcttacctggggacccgtcatatgggttgccgggaaga
aagggggagccaggcttgccagggttggatgggttaccaggtgctccagggttcaaagga
atgcggggtgaagcagcccttcctccactcggatatgagtatccgggagaacctggagac
agaggtccctttgggcctaacggaatggatggtttaccaggtctaccaggtttggccggt
gacccaggcctacccgggcaagatggattccctgggcccaagggcatgcgcggcacggac
ggatatccaggagaaccaggcagacgcggtccagatgggtctaaaggattcccaggtatt
ccgggggatcccggcctccctggtctggatggtttacctgggatgaggggtgaagacggc
ttacctggtcagccaggaagacagggtgaccgtggtgagccaggacgcagtctcactctg
ggactaccgggcctacctggagagataggcccaactgggatgccaggtacaccaggttca
gatggttaccaggggatgccagggcggccaggtcaagatggcttcccaggaatgccaggt
ttggatggtgttgatggtatcccaggagagcccggggcaccaggactggacggggatcct
ggggagccaggtcgaccgggactgcctggtcccaggggaccaagtggagattcaggttta
cctggcctggcgggtcagagaggcacggatggtttacctggggcacctggtctccaggga
cctactggagacccaggtttgccaggtctgccagggctggatggagaagacggtatacct
ggcagaattggggagccaggattacctggtctcccagggttaccaggtctgaagggtgat
atgggtgatgctggtcgccccggcaccccagggcgagacggattagatgggttacctgga
ctagacggtcgtaaaggaggttcgggcgaccctggactgagaggcctggatggacggcca
ggtattccaggcaggaaaggtggacgtggcctggatggcttacctggtgggcgaggtttg
cctggtgacccaggatactacgcagctaagggagagcctggattgcccgggctgcaagga
gtgcctgggttacgaggccgcccaggtgaggacggcttacctggcaggaaaggagagcca
ggtgtaccagggcctagcttacctggacgtgtaggtgagaaaggatatccaggtgagcct
ggcagagatggttttcctggttcgccaggcttcaagggatctgtgggtgacatgggactg
ccaggtttggatggactgccaggagagtcaggtagagatggtttcccaggagaaccaggt
agagatggcatacctggcctaaagggacctgatggagaaccaggcttacctggattacct
ggggttggaggagaaagaggcacatcgggattacctggtgtacctggccgcaaaggtgaa
cctggagatgcaggtcagtttgggctcccaggtcttcctggtccagtaggtcgtcctggt
gaggacggccttccagggcggatgggcaatgatggcttcccggggcagaagggagaacct
ggccccagcggaccagatgggttcccaggagagcagggaggtcggggcgaggatggattc
cctggtaaccctggcgacagagggcgggatggagatcctggattgcctggtcgctcaggc
tcacccggctttaagggtctccctggagatacaggctatgtaggcctgccaggtatacct
ggtgaagacgccccatttgatcagccaggtgagcgtggtgaagacgggatccccggagtg
tcaggcttaccgggcaggacaggccaaccaggtgacccaggatttgatgggcgaccgggc
aggaaaggtgaaccaggggtgccaggtgtgggactgaagggaataaagggggagccaggt
ctgtcaggactaccaggtctgccaggtattgatggatatccgggatcacctggggagcca
ggcttacctggactgccaggttttaagggtgacccagggccgaatggcccaccagggcca
gatggcagaccaggtctcccagggccagatggacccccgggtttgaatggcctgccgggt
ttgggcgggtttaagggagaacctgggtacccaggtttgcctggcttggatggcatgaaa
gggttgccaggagacaacggttttccaggaaatgcaggcagagatggccccagaggagac
ccaggtgtacctggtcgcaagggagagcctggttacttacagagaccagtggagctgcca
ccccagaagggagaaccaggagacgtgggcttcccgggagctcctgggtttccaggccct
gtgggtgaatcaggtttacctggagtggatggtatgcgtggtaccgatggcaggcccggg
ctgtatggtttacctggaatctcgggacgcaagggagagaggggtccatttggaagagag
gggttacggggtctgcctggtctggagggacccccagggtttcagggatcacctggacag
cctggtccctcaggaggagcgtacggcttccatttcgcaagacacagtcagacctcagaa
gtccccaactgccccgagaacacagtacggttgtggacgggttactcgctcctttttgtg
cagggaaacagccgagcagcagggcaggatcttggtaacagcggaagttgcttaaggagg
ttccacacaatgccgttcatgttctgtaacatcaacaacgttgtgcacagtatcctggag
aaatga
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