Liolophura japonica (common chiton): 135480157
Help
Entry
135480157 CDS
T09976
Name
(RefSeq) spliceosome RNA helicase Ddx39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03013
Nucleocytoplasmic transport
ljp03015
mRNA surveillance pathway
ljp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135480157
09122 Translation
03013 Nucleocytoplasmic transport
135480157
03015 mRNA surveillance pathway
135480157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135480157
03041 Spliceosome [BR:
ljp03041
]
135480157
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135480157
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135480157
Spliceosome [BR:
ljp03041
]
Complex C
Other components
EJC/TREX
135480157
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135480157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
ResT-TelK_cat
AAA_19
Motif
Other DBs
NCBI-GeneID:
135480157
NCBI-ProteinID:
XP_064615991
LinkDB
All DBs
Position
13:complement(6281314..6287864)
Genome browser
AA seq
427 aa
AA seq
DB search
MADNENEAELLDYDEEENETTTEAAGDATQKKDVKGTYASIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVLAH
TRELAFQISKEYERFSKYMNNIKIAVFFGGLPIKKDEEVLKKNCPHIVVGTPGRILALAR
NIKSLNLKNIKHFILDECDKMLDQLDMRRDVQEIFRMTPHEKQCMMFSATLSKDIRPVCK
KFMQDPMEVYVDDDSKLTLHGLRQHYVKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTRGLAITFVSDENDAKVLNDVQDRFEVNITELPDEIDI
GSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacgaaaatgaagctgaattattggactatgatgaggaggaaaatgaaacc
accacagaggcagctggagatgcgacccagaagaaagatgttaagggaacatacgcctcc
attcacagttctggtttcagggacttcttgttgaaaccagaactgctacgtgccattgtg
gactgtggtttcgagcatccatcagaagtccagcacgagtgtatcccacaagccatcctg
tctatggatgtgttatgtcaggccaaatcgggtatggggaagactgctgtgtttgtgctg
gccacattacaacaactagatccagtggacggtcaggtttcagtcttagtgttggcacac
actcgtgaactggccttccagatcagcaaagagtacgagcgtttcagcaagtacatgaac
aacatcaagatcgccgtgttcttcggagggttgcccatcaagaaggacgaggaagtgcta
aagaagaactgcccacacatcgtggtgggaacgccagggaggattctcgctctagccaga
aacatcaagtccctgaatctgaagaacatcaagcatttcatcctggacgagtgtgacaaa
atgctcgaccagctagatatgaggcgcgatgttcaagaaatcttccgcatgacgccccac
gagaaacagtgcatgatgttcagcgccaccctcagcaaagatataagaccagtctgcaag
aagttcatgcaagatcctatggaggtttatgtggatgatgactccaaactgactctccat
ggactaaggcagcattatgtgaaactaaaggacaacgagaagaaccgcaaactgtttgag
ctgttagatgtgctggagttcaatcaggtgataatctttgtgaagtctgtacagcggtgc
atggcattggctcagctgttagtggagcagaactttccggctattgccatccacagagct
atgacacaggatgaaaggttgtctcggtaccagcagttcaaagatttccaaaagcgaatc
ctagtggccacaaatctgtttggtcgaggcatggacattgaacgagtcaacattgtgttt
aactatgacatgcctgaggactctgacacttaccttcacagggtggcccgtgcaggtcgt
tttggcaccagaggtttggccatcacgtttgtgtctgacgaaaacgatgctaaggtctta
aacgacgtacaggacaggtttgaagtgaacatcacagaactgccggacgagattgacatc
ggctcctacattgaaggacgttaa
DBGET
integrated database retrieval system
