Liolophura japonica (common chiton): 135480260
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Entry
135480260 CDS
T09976
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135480260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135480260
03041 Spliceosome [BR:
ljp03041
]
135480260
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135480260
Spliceosome [BR:
ljp03041
]
Complex B
Other components
Prp19-related factors
135480260
Complex C
135480260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
ARM_TT21_C
NRDE-2
ARM_TT21
PPR
PPR_2
DUF6381
Motif
Other DBs
NCBI-GeneID:
135480260
NCBI-ProteinID:
XP_064616120
LinkDB
All DBs
Position
13:6151181..6183402
Genome browser
AA seq
845 aa
AA seq
DB search
MPVTEQPKNIFFEEADLAYEEEILRNPYSVKCWLRFVEHKKQAPKSAINLIYERALRELP
GSYKLWYNYLKLRRQQVKGHIITDSVYEDVNNAFERSLVFMHKMPRIWLDYCQFLMDQCM
ITRTRRTFDRALRALPISQHYRIWPLYLKFARMYPLPETAVRIYRRYIKLQKENMEDYIE
YLKLIGRLDEAAKRLVDIIDDDGFTSKAGKSKHQLWNELCELVSKNPDKVTSLKIEPIIR
QGLKRFSDQIGLLWNSMADYYIRSGHFEKARDIYEEAIMTVVTVRDFTQVFDAYAQFEKS
MISAKMETTSELGPTEEDDLDLELRLARLEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVK
LFEGKPREIINTFTEAVQTVDPKLASGKPHTLWVAFAKFYESAGQVDDARVIFDKAVKVP
YKHVDDLASVWCAWAEIEILHENYEEALKLMQRVTTPPSRKVSYHDEAETVQSRVHKSLK
VWSLYADLEEGFGTFKSCKAVYDRIIDLRIATPQIIINYGMFLEENNYYEEAFKAYEKGI
ALFKWPNVYDIWNTYLTKFINRYGGTKLERARDLFEQCLESCPAKFAKAIYLLYAKLEEG
HGLARHAMAVYDRATQGVLPEERYEMFNIYLKQAAEISGVTYTRQIYEKAIEVLDEDSAR
EMCVRFAELEKKLGEIDRARAVYAHCSQICDPRVAPKFWQAWKEFEIKHGNEDTVREMLR
IKRSVQATYNTQVNFMSAQMLAVNSAKEAAESTQNADEMKKLEERARQLADEAAKDQVKP
DKGILFVRSNTTNEELGEMTKTANPDEINIDEDFSSDEDETVEEVEVQQQSVPTQVFGGL
ANEDD
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgacagagcagcctaagaatatattttttgaagaagctgacttggcatatgaa
gaggagattcttcgcaatccttactctgttaaatgctggctccgatttgttgaacacaaa
aagcaagctccaaaatctgctattaatttgatttatgaaagagcattaagagaacttcct
ggaagctacaaactatggtacaactatctgaagttacgtcgccagcaggtcaaaggtcac
attatcactgactctgtgtacgaagatgtcaataatgcatttgagaggtcactcgtgttc
atgcacaagatgccgagaatatggttggattactgccagttccttatggatcagtgtatg
atcacacgaactcgtcgtacgttcgatcgcgccctccgtgccctgcccatttcccaacac
tacaggatctggccgctgtacctgaagtttgcccgcatgtacccattgccagagacggct
gtacgcatctacagacggtacattaagctgcaaaaagaaaacatggaggactatatagag
tatctgaaattgattggtagattggatgaagctgcaaagcgattggttgacattattgat
gatgatggcttcacatctaaggcaggaaaatctaaacaccagctttggaacgagctctgt
gagctggtgtccaaaaacccagataaagttacctccctgaagattgaacccatcatccgc
caggggctgaagaggttttctgaccaaatcggccttctgtggaactccatggcagactac
tacatcaggagtgggcattttgaaaaggcacgggacatttacgaggaagcgatcatgaca
gtggtgacagtacgagatttcacacaggtgtttgacgcttatgctcagtttgagaagagc
atgatcagcgccaagatggagaccacatctgagttaggacctacagaggaagatgatctt
gatttggagttgcgattggccagactggaggacctgatggacaggagaccacttctctta
aacagtgtgttgctgagacagaatccacacaatgttcacgagtggcacaagcgcgtcaaa
ttgtttgaaggcaaaccaagagagattatcaacacattcacagaagctgttcagactgtt
gaccctaagctggcctctggcaagccacacacactctgggtggcatttgccaagttttat
gagagtgcaggacaagtagatgatgcacgcgtgatttttgacaaggctgtgaaagtgccg
tacaaacacgtagacgaccttgcgtctgtgtggtgcgcctgggctgagatagagattctt
cacgagaattacgaggaggcgttgaagctgatgcagagggtgacgacccctccgtcaaga
aaagtctcttaccatgatgaggcagaaacagttcagagtagagttcacaagtcactcaag
gtctggtcgctttatgcagatttggaggaaggcttcggaacgtttaagagctgtaaggct
gtgtacgaccgtataatagacctgaggatcgcaacgccacagattatcatcaattatggg
atgttccttgaggagaacaactattacgaggaggcctttaaggcctatgagaaagggatt
gcgctgttcaaatggcccaacgtgtacgacatttggaacacttacctgaccaaattcatc
aacagatacggtggcacaaagctcgaaagagctcgtgacctctttgaacaatgcctagaa
agctgcccagctaaatttgccaaagccatatatctgctgtatgccaagctggaggaggga
catggattagcgcggcacgctatggctgtctatgaccgtgcaacgcagggagtgcttcct
gaagagcgatatgagatgttcaatatttacctgaagcaggcggcagagatttcaggtgtg
acgtacacgaggcagatttatgagaaggccattgaagtgctcgacgaagactcagccagg
gaaatgtgcgtaagatttgctgagctggagaagaagttgggagaaattgaccgagccaga
gctgtgtacgctcactgctctcaaatatgtgatcctagagtggcccccaaattttggcag
gcgtggaaagagtttgagatcaagcatggcaatgaagacacagttagagagatgttgagg
ataaagagaagtgttcaggccacatataacacacaggtaaatttcatgtctgctcagatg
ctggctgtcaactctgctaaagaagcagcagagtccactcagaatgcagatgagatgaag
aagttagaggagagagcccgacaattagctgacgaggcagccaaggaccaagtcaagcct
gacaagggcatcttgtttgttaggagcaacacaacgaacgaggagcttggtgagatgacg
aaaacggccaatcctgacgaaatcaatattgacgaggacttctccagtgatgaagacgaa
actgttgaagaagtagaggttcaacagcagagtgttccaacacaggtgtttggaggccta
gccaatgaagacgactaa
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