Liolophura japonica (common chiton): 135480477
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Entry
135480477 CDS
T09976
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135480477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ljp03041
]
135480477
Spliceosome [BR:
ljp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
135480477
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
PRP4
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
WD_LRWD1
WD40_like
Beta-prop_Nup120_160
Ge1_WD40
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
135480477
NCBI-ProteinID:
XP_064616387
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Position
13:16761871..16775239
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AA seq
514 aa
AA seq
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MSDDDEPQYKRSKTLHYGSLEEQERRRLANPESTGSLASDAIQAGVSAGNINLTEADIME
IDEDIRQSQAELLAEFEKRKRARQIQVSTDDSEVKANLRQLGEPICLFGEGPADRRERLR
KLLGTIGEDSLKKKGIHQQQQKQKEEQENITWYHEGPDSLRDARIWLAKYSLPRAKARLE
KQRELKDIPQTQKQAATQDLHKRLRSLTIECSQIGDNRPLSFCQFSPNCKMLAVGSWSGL
CKLWSVPNCDHIRTLRGHNCNVGAIVFHPQATLTLDDSACCLASCGQDGTVKLWNLISDE
PIADIEGHAPYRVSRLAYHPSGRFLGTCCFDNSWRLWDLEAQEEILHQEGHSKPVYDLAF
QGDGALAVTGGLDAFSRVWDLRTGRCIMFLEGHLKSVLCVDVSPDGYHVATGSEDNTCKI
WDLRQRKCSYTIPAHTNIISKVKFQPNHGNYLITSSYDQTAKVWAHPVWSPLKSLAGHEG
KVMCLDISSDLKYMVSASFDRTFKLWQTELPGGL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgatgatgaacctcagtacaagcgctccaaaacactgcattatgggagtttg
gaggaacaagaacgcaggcgtctggccaatccagaatccacaggctcgctggcatcagac
gccatccaggccggcgtgtctgcaggaaatatcaaccttacagaagctgacataatggag
attgatgaagatatcagacagagtcaagccgagttgttagctgagtttgagaaaagaaaa
cgggctcgtcagatacaagtctctacagacgactcggaggtaaaagctaacctgagacag
ctgggagaacctatatgtttgtttggagaaggacctgcagacagaagggaaaggttacgc
aaacttttgggaacaattggagaagacagtctgaagaaaaaaggcatccatcaacagcaa
cagaaacaaaaggaagagcaggaaaatatcacctggtaccacgagggcccagattcttta
cgagacgcccggatatggctggcaaaatattcccttcccagggcgaaggcgcgtttagaa
aagcaaagagaattaaaggacatccctcagactcagaaacaagctgccactcaagatctt
cataaacgcctgaggtcactgacaatagaatgcagtcagataggggataatcgaccattg
tctttctgccagttcagtccaaactgtaaaatgctggccgtcggatcctggtcaggtttg
tgtaagctctggtcagtgccgaactgcgatcatatccgcacattaagaggacacaactgt
aatgtaggagccattgtcttccaccctcaggccacacttaccctcgacgactcagcctgt
tgcttagcctcctgtggacaagatgggacggtcaaactgtggaacttgatcagtgatgag
cctatagccgacatcgagggtcacgccccgtacagagtgtctcgtctggcataccacccc
tcggggcgcttccttggcacatgttgttttgacaactcgtggaggctttgggatttagag
gctcaggaggagattttgcatcaggagggtcactccaaacctgtgtatgacctggcgttc
cagggggatggggcactggccgtcacaggtggccttgatgccttttcgcgagtttgggat
ttgagaactggtcgctgtatcatgtttctagaaggtcatctaaaatctgtgctctgtgtt
gatgtttctccagatggataccatgtagcgacaggaagtgaagacaacacttgcaagatt
tgggatctgcgacaacgaaaatgttcctacaccattccagctcataccaatataatctca
aaagtcaaatttcaacctaatcatgggaactacctgatcacttcatcctatgaccagaca
gccaaggtttgggcacatccggtctggtctccactgaaaagccttgctggacacgaaggc
aaggtcatgtgcctggacatatcctccgatctcaaatacatggtgtcagcgtccttcgat
cgaacgttcaaactgtggcagacggagcttcctggcggcctgtga
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