Liolophura japonica (common chiton): 135480540
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Entry
135480540 CDS
T09976
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 4-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03022
Basal transcription factors
ljp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135480540
09124 Replication and repair
03420 Nucleotide excision repair
135480540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljp03021
]
135480540
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135480540
Transcription machinery [BR:
ljp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135480540
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135480540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ANT
Motif
Other DBs
NCBI-GeneID:
135480540
NCBI-ProteinID:
XP_064616463
LinkDB
All DBs
Position
13:18034650..18048249
Genome browser
AA seq
461 aa
AA seq
DB search
MSAAAASTGTLNCKNLYSYLRSLSPLVLDKLYSHPATCLAVFRELPELARLYVMRILFVE
QPVPQAVVSLWVDNHYQEEHRMASKQLSDLHVWQEQPIPGGMPGWILKNTYRKNLKVALL
GGGSPWLGGAVLTADKYAKDIPFLDSYALERWECVLKFMVGTSEGSEGVSRDVVEILLHS
GLMKGEASEPTPSITSXGLQFLLMETSQQVWFFMLQYLDNVETRGMDLVECLSFLFQLSF
STLGKDYSTEGMNESQMKFLQHLREFGLVYQRKRKSQRYYPTRLAINLASGLNKSNTDVH
RTGFIVVETNYRVYAYTDSPLQVALIALFCEMLYRFPNLSIGNLSRDSVRQALTRGITAE
QIVNFLRSHAHPNMMKNKPVLPPTITDQIRLWELERDRLKFSEGVLYNQFLSQSDFDLLK
DYAEDMGVLTWSNPTKRMMVVTRAGHDDVKKFWKRQRQNNS
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgctgccgcgagcacggggacattaaactgtaagaatttgtattcgtatttg
cgtagcttgtccccgctcgtgctcgataagctgtacagtcatccagcaacatgtctggca
gtcttcagagagttacccgagctggcgaggctgtatgtgatgagaatcctgtttgtggag
cagccagtccctcaggcagttgtctccctttgggtcgataatcattatcaagaggagcac
cgtatggccagcaagcagctgtctgatttacatgtgtggcaggagcagcctattccaggg
ggcatgccaggctggatcctgaaaaatacatacaggaagaacctcaaggtggccctgtta
ggagggggctctccttggctcgggggtgctgtcctaacagctgataaatacgccaaagat
atcccatttctggattcttatgcattagaaagatgggagtgtgtgctgaaattcatggtg
gggaccagtgagggttcagaaggggtgagccgcgatgtcgtggaaatcctcctgcactca
gggctcatgaagggagaagcatcagagccaaccccatccatcacatctnttgggcttcag
tttctcctgatggagacaagtcagcaggtctggttcttcatgttacagtacttggacaat
gttgagacgagaggaatggatctagtggaatgtctttcatttttatttcaactcagcttt
tctaccttaggaaaggattactccacagagggcatgaatgagtcacaaatgaagttttta
caacatctccgtgagtttggactcgtctaccaaagaaagcgtaaatctcagagatactat
cccaccaggctcgcaatcaacctggcctctggccttaacaaatccaacacagatgtccac
cgtacaggattcatcgttgttgaaacaaactacagggtttacgcctacacagattctcct
ctacaagttgccttaattgctctcttctgtgaaatgttgtacagattcccaaacttgagc
ataggtaacttgtcacgtgacagtgtgagacaggcactgacaagggggataactgctgag
cagattgtcaatttcctgaggagccatgctcacccgaatatgatgaaaaataaacctgtg
ttgccgcccaccatcacagatcagatacgactgtgggagctggagcgcgacagactgaag
ttctcagagggtgtcctctacaaccagttcctctcacagagtgattttgaccttctcaag
gactatgctgaggatatgggtgtgttaacatggtcaaatcccaccaaacgaatgatggtt
gtcacaagggcaggtcatgatgatgtcaagaagttctggaagcgacaacgtcagaacaac
agctga
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