Liolophura japonica (common chiton): 135481964
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Entry
135481964 CDS
T09976
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase cgh-1-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135481964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135481964
03036 Chromosome and associated proteins [BR:
ljp03036
]
135481964
Enzymes [BR:
ljp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135481964
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
135481964
mRNA degradation factors
5'-3' decay
Decapping complex
135481964
Chromosome and associated proteins [BR:
ljp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
135481964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
135481964
NCBI-ProteinID:
XP_064617831
LinkDB
All DBs
Position
1:96313597..96358878
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AA seq
465 aa
AA seq
DB search
MATKVEQNSVLPNHSGPVNAEQKTNKYVSSDKGWKTQLNLPPKDNRLRTTDVTNTKGNEF
EDFCLKRELLMGIFEKGWEKPSPIQEASIPIALTGRDILARAKNGTGKTGAYAIPIIERC
DPTKDEVQAMIIVPTRELALQTSQICIELXKHIGCKVMATTGGTNLKDDIMRLYDPVHVI
IATPGRILDLMNKNLVKIGKCQMLVLDEADKLLSQDFKGMLDNIINHLPNKRQILLYSAT
FPVTVEQFMKKHLSNPYEINLMDELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII
FCNSTQRVELLAKKITELGYSCFYIHAKMNQQHRNRVFHDFRQGLCRNLVCSDLFTRGID
IQAVNVVINFDFPRHAETYLHRIGRSGRYGHLGVAINLITYEDRFALHRIEQELGTEIKP
IPKIIDKALYVAEFHLSDMDGQEEEDAKHATHSKMSTHQTIQTTK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcaactaaagtggagcagaattctgtgctgccaaatcattctgggcctgtgaatgcc
gagcagaagaccaataagtacgtctcaagtgacaagggctggaagacacaactgaacctc
cctccaaaagacaacagattgagaacaactgatgtaacaaataccaaaggaaatgagttt
gaagatttctgcctgaaacgagagctcctcatgggtatatttgagaaggggtgggagaag
ccctctcccattcaggaagccagcattcctatcgccctgactgggcgggatatccttgca
cgtgctaagaatggaactggcaaaactggtgcctatgccattccaatcatcgaacgatgt
gacccgaccaaagatgaagtccaagctatgatcattgtgccaacaagagagttagcgctg
caaactagtcagatctgtatagagctgngcaaacatattggctgcaaagtcatggccacc
actgggggtacaaacctgaaggatgacataatgagactatacgacccagtgcatgtgata
attgccactccaggaaggatattggatctcatgaacaaaaacttggtgaaaattggaaaa
tgtcagatgctggttttggatgaggctgacaaactcttatctcaggattttaaaggcatg
ctagacaatatcatcaatcatttacccaacaagcgacagatcctgttatactctgcaacg
tttcctgtcacagttgagcagttcatgaaaaaacatttgagcaacccatacgagatcaac
ttgatggacgagttgaccctaaaaggagtcacacagtattacgcctttgtgcaagagcgt
caaaaggttcattgcctgaatacattgttttcaaagctccagatcaaccagtccatcata
ttctgtaactcaacgcagcgtgtagaactgctggcaaagaaaataacagagctcggctat
tcctgcttctacatacatgccaaaatgaatcaacagcatcgtaacagagtattccatgat
ttccgccagggcctctgcagaaatcttgtctgttctgatcttttcacaagaggaattgat
atccaggctgtgaatgttgtcattaactttgacttccctcgtcatgcggagacgtacttg
cataggattggcagatcgggaagatacggccatctgggagtggccatcaatttgattact
tatgaagacaggtttgcattacacagaattgagcaggagctcgggacagaaatcaagcca
atccccaagataatcgacaaagccctgtacgtggcggagttccacctgtctgatatggat
ggccaggaagaagaggacgctaagcatgccacccacagcaagatgagcacgcaccaaacc
atccagacaaccaaataa
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