Liolophura japonica (common chiton): 135482401
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Entry
135482401 CDS
T09976
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135482401
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ljp00536
]
135482401
Glycosaminoglycan binding proteins [BR:
ljp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135482401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
135482401
NCBI-ProteinID:
XP_064618438
LinkDB
All DBs
Position
1:complement(70758118..70785213)
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AA seq
1341 aa
AA seq
DB search
MDVPGQMGRRGNEGAPGAQGPAGSRGDPGRNGNNGIPGPPGPPGASPDYQADNYFPQGFN
KGYGFQQSSYITAQPGPQGPRGPPGPPGQPGPPGFQGLPGESGDPGQPGHPGPRGPPGAP
GLAGESGDSGRDGEPGPRGLQGLQGARGLPGIPGLPGPKGHRGFPGVSGRQGNQGIPGEK
GATGPSGPAGVPGAVGESGAPGSQGRDGAPGPAGLRGIDGSPGSPGSPGAIGPSGPPGIP
GVSGSKGDRGPAGPKGSVGPQGARGESGLAGAPGEAGRTGPAGTPGSDGEKGNTGGVGAA
GPPGFPGPRGPPGLNGSPGLPGPKGENGSPGQAGGPGEHGERGSPGVPGERGLPGLQGAD
GKRGPRGSPGPPGPQGVAGERGTSGERGAPGSNGFAGMKGETGERGARGETGEAGPVGDS
GRPGPPGPPGLRGPTGTPGADGRSGESGPSGPPGNDGKTGEQGPQGERGLPGLQGAPGAP
GETGFPGKDGKQGSPGPRGPHGDRGSTGLPGDQGLTGPQGEVGERGDPGNRGPAGFQGLP
GQPGQPGEPGRPGEPGRPGSQGEPGPPGERGERGFPGEVGLSGPTGAPGERGAPGPSGQD
GPPGPPGPTGERGEQGPPGLVGLPGERGGAGPPGERGPNGEQGARGTDGAPGKNGEVGEP
GDQGIPGPPGLNGAKGQRGDAGGRGEIGQPGQQGEMGQIGRPGPQGAPGLQGPPGSMGPT
GELGSPGAKGETGAPGVPGEPGQQGESGADGVQGRKGARGDQGPVGLNGAPGVPGRPGPQ
GPPGSPGKTGVAGPNGRPGLKGSRGESGPPGRAGEVGAPGLPGRDGVRGDRGQDGRSGPQ
GPPGPAGPQGERGPPGMPGMQGDRGSPGPMGPKGTTGEIGRAGNDGHPGAQGPPGPPGFP
GSPGEPGQAGSDGAPGLAGIPGRAGEKGPQGPPGSTGPQGQRGLPGPQGPPGQSGEAGPR
GLRGETGPDGPVGPQGPRGAPGAPGPQGEKGEMGVRGIRGAKGHIGLPGLQGLPGPQGPS
GEQGPAGSPGPQGVPGSTGPRGNPGNDGGPGVPGNRGPPGPRGPSGDDGPAGPMGEAGQP
GRPGPPGGAAYRGDWASYFMRDSPDVAFGDGAKESAFEALNRISAALDRIKVPTGSKESP
ARTCEELIEANGGKTLKDGMFWIDPNQGVPEDSIQAYCKIETRETCVMPSPSKTGFKRWA
RGILDNHVSFTEFSKKQLHYKAEDSQINFLQVLTSHAYQNVTYHCRNSVAYGDSAENRDV
SYKAIQLERWDGESLKANGSVKRRYAVKFDGCKEKKNTWDKTVVEVDTDNTHWLPINDVK
VYDVGAENQEFGIELGPVCFR
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggacgttcctggacaaatgggtcgccggggcaatgagggtgccccaggagcacaaggc
cccgccggttcaaggggagacccaggccgtaatggtaacaatggcatcccgggcccccca
ggtccccccggcgcttctccagactaccaggctgataactactttccacaaggcttcaac
aaaggctatggattccaacaatctagttatataacagctcagcctggtcctcaaggccct
cgcggtccacctggcccgcccggacagccgggtccacctgggttccaaggtctccctggg
gagtcgggggatccgggtcaacccggccatccgggtccacgtggtccacccggcgcgcct
ggtctagctggagaaagtggtgacagtggacgagacggtgaaccaggaccccgtggatta
caaggccttcagggcgctcgtgggttgcccggtatcccaggtctgcctggaccaaaaggc
caccgaggtttccccggtgtgtctggacgtcaaggaaaccaaggtattcccggtgaaaag
ggagctactggcccgtccggtcctgctggtgtccccggtgcagttggtgagagcggtgct
ccaggatctcagggacgtgatggcgctccaggaccagctggtttgaggggtattgacgga
tcacccggaagtccgggctcccccggagctattggaccctctggacccccaggtattcca
ggtgtatcaggatctaagggagaccgaggacctgctggacccaagggtagtgtgggacct
cagggcgcacggggagaaagcgggttagccggggctccaggtgaggcaggacgaacagga
ccagcgggaactcctggctccgatggagagaagggaaacacaggtggtgttggtgccgct
ggtcccccaggattccccggccctcggggtccgcccggtctgaatgggagccctggatta
cccggccccaagggagaaaatggttcccccggacaagccggaggtcctggtgagcatgga
gagcgaggatcacccggagtgcccggagagaggggtctacccggacttcagggcgcagac
ggtaagcgaggcccccgaggctccccaggaccccctggtccacaaggtgtggcaggagag
aggggaaccagcggtgagcgtggagctcctggatctaacggatttgctggaatgaagggc
gagacaggggaacgtggagcccgtggagaaactggcgaggctggccccgtgggtgactca
ggccgacctggtcccccaggacctccaggattgaggggacctactggaacccccggtgct
gacggaagatctggcgaatctggaccatctggtccccctggtaacgatggtaagactgga
gaacaaggtccccaaggagagcgtggtctacccggtctgcagggagctcccggagcccca
ggagaaacgggattccccggtaaagacggcaaacaaggtagtcccggcccccgtggccct
cacggggaccgtggttcaaccggccttcctggtgatcagggtcttactggtcctcagggt
gaagtaggagagaggggagatcccggtaacaggggacctgctggtttccaaggtctgccg
ggacaaccaggacaacctggagaaccagggcgacctggtgagcctggacgacctgggtcc
cagggtgaaccaggacctcctggtgagcggggagaaagaggattcccaggagaggttgga
ctgtctggcccgaccggtgccccaggagagagaggtgcccccggaccctctggacaggac
ggaccaccaggtccacctggaccgactggcgagagaggtgaacaagggccacctggtctg
gtgggtctgcccggagagagaggtggcgccggacccccaggagaaagaggacccaacggt
gaacaaggtgcccgaggcacagacggtgctccgggaaagaatggagaggtcggtgagccc
ggagaccagggtattcctggtccccctggactgaacggtgctaaaggacaacgtggggac
gccggaggacgtggtgagattggccagcctggccagcaaggtgaaatgggacaaatcggc
agacccggtccacagggagctccaggacttcagggtcctccaggttccatgggaccaact
ggtgagctaggatccccaggcgctaagggagaaactggagcccccggtgttcctggtgaa
cctggacaacaaggagagagtggagctgacggtgtccagggacgaaagggtgcccgtggt
gaccaagggcctgtgggtctgaacggtgccccgggtgtgccgggtcgtcctggtccccag
ggacctccaggttccccaggaaaaactggcgtcgctggtccaaacggaaggccaggatta
aagggctctcgcggtgaatctggacccccaggtcgggctggagaggtaggagccccaggt
ctgcccggaagggatggtgtccgaggagaccgaggtcaggacggacgatctggtccacaa
ggtccgccaggtccagctggtccccaaggagaacggggtcccccaggtatgccaggtatg
cagggagatcgagggtcaccaggtcccatgggaccaaagggtaccactggagagattgga
cgggcaggaaatgacggccatcccggtgctcaaggccctcctggacccccaggattccca
ggctctcccggagaaccaggccaggctggcagtgatggcgcacctggcttagcaggaatc
ccaggtcgtgcaggtgagaagggtccccagggacctccaggatccacagggccccagggt
cagaggggacttccgggcccacaaggacctccaggtcaaagcggtgaagcaggcccaaga
ggtttgaggggagaaacaggtcccgacggtccagtcggtccccaaggaccacgaggagca
cctggcgcaccaggtccccagggagagaaaggagaaatgggagtccgaggtatcaggggt
gctaagggccacatcggtctaccaggtttgcagggtctacctggcccacagggtccatca
ggagaacaaggccccgccggatcaccaggcccacagggagtgccaggctctaccggtcca
cgtggtaacccaggtaatgacggaggtccaggtgtgcctggaaaccgaggtccacctggt
cccagaggtccatctggagacgatggtccagcaggtcccatgggtgaagctggtcagcct
ggacgtcccggtccaccaggtggcgctgcttacagaggagactgggcatcctatttcatg
agggattctccagacgtggccttcggtgatggtgccaaagaatctgccttcgaagccctt
aaccgcatctctgcagcattagatcgaattaaagtaccaacaggtagcaaagaatctccc
gcccgcacttgtgaagagctcatagaagccaacggcggcaaaactctaaaggatggtatg
ttctggattgatcctaaccagggtgtaccagaggacagcatccaggcatactgtaagatc
gagacaagggagacctgtgtcatgccaagcccctctaagaccggatttaaacgatgggca
agaggcattctagataatcacgtgtcatttactgaattcagtaagaagcagcttcactac
aaggcagaggactctcagatcaacttcctccaggttcttacaagccacgcctaccagaac
gtcacatatcactgccgcaactctgtggcttatggtgactcagcagaaaaccgtgatgtc
agctacaaggccatccaattagaacgatgggatggagaatcactgaaggccaatggcagt
gtgaagagacgatatgctgtcaaatttgatggttgcaaggaaaagaaaaatacctgggac
aaaacagttgtagaagtagatacagacaatacacactggctaccaatcaatgacgtcaaa
gtttatgacgtaggagccgaaaaccaagagttcggcattgagctcggtccagtctgtttc
cggtaa
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