Legionella jordanis: NCTC11533_00253
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Entry
NCTC11533_00253 CDS
T06275
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ljr
Legionella jordanis
Pathway
ljr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ljr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC11533_00253 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljr03021
]
NCTC11533_00253 (rpoC)
03400 DNA repair and recombination proteins [BR:
ljr03400
]
NCTC11533_00253 (rpoC)
Enzymes [BR:
ljr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC11533_00253 (rpoC)
Transcription machinery [BR:
ljr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC11533_00253 (rpoC)
DNA repair and recombination proteins [BR:
ljr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC11533_00253 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
VEH11427
LinkDB
All DBs
Position
1:279037..283269
Genome browser
AA seq
1410 aa
AA seq
DB search
MANLEPMKKPPVMSDLLGILKQQGQSEEFDAIKIALASPDLIRSWSYGEVKKPETINYRT
FKPERDGLFCAKTFGPIKDYECLCGKYKRLKHRGVICEKCGVELALAKVRRERMGHIELA
SPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFEAFVVVDPGMTELERGQLLNDEAYLDA
MEQYGDEFDARMGAEAIRDLLRQIDLEEEIRTLREELPTTNSETKIKKITKRLKLLEAFQ
ESGNKPEWMIMDVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAP
DIIVRNEKRMLQESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVD
YSGRSVIVVGPTLRLHQCGLPKKMALELFKPFIFSKLEFRGLATTIKAAKKMVEREDPVV
WDILDDVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAV
HVPLTLEAQLEARSLMMSTNNILSPASGEPIIVPSQDVVLGLYYLTRERINAPGEGKIFA
SPQEAQNFYEAGYVDIHAKVKIRMPREDAEGYHLVDTTVGRAILSDILPKGMSFTLINRP
MTKKAISKVVDTCYRKFGLKETVIFADQLMYTGFKFATRAGASIGIEDMEIPDDKAAIIE
QADNEVREIEAQYRSGLVTNGERYNKVIDIWSRTNEMVAKSMMAKIATEEVATRDGKTVR
QESFNPIFMMADSGARGSAAQIRQLAGMRGLMAAPDGSIIETPITANFREGLNVFQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDVVITEDDCGTEHGILMQPLIEGGDIVEPL
HERVLGRVVATDVYIPNQQEPIVTAGTLLDEDWVEKLERFGVDQVHVRSPITCETRFGLC
AKCYGRDLARGHLVNTGEAVGIIAAQSIGEPGTQLTMRTFHIGGAASRATAANNIQIKNK
GIIRLHNIKTVSQEGGNLVAVSRSGEVSVVDDFGRERERYKLPYGAVLSVHDNTSAEAGQ
IIATWDPHTHPVISEVSGRLKFVDLIEGMTMNRQTDELTGLSNIVVTDAKQRTSAGRDLR
PMVKLVSDDGDDIYLAGTNVPAQYYLPVDAIINFEDGSAVGVGDVIARIPQERSKTRDIT
GGLPRVADLFEARKPKDAAVMAEISGLVNFGKETKGKRRLIITASEYESHEELIPKWRHI
SVFEGEHVERGEVIADGPLNPHDILRLLGVGALANYIVNEVQDVYRLQGVKINDKHIEVI
VRQMLRKRIITSAGDSKFLVGEQIEESVMLQENDKLSAEGKQVAQGTPILLGITKASLAT
ESFISAASFQETTRVLTEAAVSGKVDDLRGLKENVMVGRLIPAGTGYAYHQGRKAKRARA
ASTEHSTHTVTASDVEHALSEALNADHHDH
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
ttggctaatctagaaccaatgaaaaaaccaccggtgatgagtgatttgcttggtattctc
aaacagcaaggccaaagtgaagagtttgatgctattaaaattgctcttgcttcacctgat
ttaattcgctcatggtcctatggcgaggttaagaagcctgagacgattaattatcgtaca
tttaaacccgagcgtgatggattgttctgcgctaaaacatttggtcccatcaaagactac
gaatgtttatgcggtaaatataagcgtcttaagcatcgtggtgtcatatgtgagaagtgc
ggtgttgaactggcgctggcaaaagtacgtcgtgagcgtatgggccatattgagttagcc
agcccggttgctcatatatggttccttaagtcattgccttctcgtattggtttgctgctt
gatatgacgctgcgtgacattgaacgcgttttatattttgaagcatttgtagtcgtcgat
cctggaatgactgaactcgaacgcggccaattgttaaatgacgaagcttatcttgacgcc
atggagcagtatggtgatgaatttgatgcccgcatgggtgcagaagccattcgcgatctg
cttcggcaaattgacttggaagaagaaatccgcacattacgcgaggaacttccaacgact
aattcagagaccaagatcaagaaaatcactaaacgattgaaattgcttgaagcgtttcaa
gagtctggcaataagccagagtggatgattatggatgtcttgcccgtcctaccgcctgac
ttacgtccattggtacctttggatggcggacgtttcgcaacatcggatttgaatgatttg
taccgccgtgtcattaaccgaaataatcgcctcaaaagactgcttgatctaaatgcgcct
gatattatcgtgcgtaatgaaaaacgcatgctgcaagagtcagtagacgcattgctggat
aacggccgccgtggtcgtgcgattacaggaaccaacaagcgtccattgaaatctctggct
gacatgattaaaggtaagcagggtcggttccgtcaaaatcttcttggtaaacgcgtggat
tattcagggcgttcagtaatcgtagttggtccaactttaagattgcatcaatgcggattg
ccgaagaaaatggctcttgagctgtttaaaccgtttatctttagcaagctggaatttaga
ggcttggcaacgaccattaaagctgccaagaaaatggtggagcgcgaagacccagtcgtt
tgggatattttggatgatgtcattcgtgaacatccaatcttattaaaccgagccccaaca
ttgcacagactgggtattcaagcattcgaacccgtcttgattgaaggtaaagccatacaa
cttcatccattggtttgtacagcatataacgctgacttcgatggtgaccaaatggcagta
cacgtaccccttacccttgaggcccagctggaagcgcgttcattgatgatgtcaacgaac
aatattctttctcctgcaagcggtgagccgattattgttcccagtcaggacgttgtttta
ggactttattatctcactcgcgaaagaatcaatgctccaggtgagggcaaaatatttgcc
agccctcaagaggcgcaaaatttctatgaagcgggctatgttgatattcatgccaaggta
aaaatacggatgccgcgtgaagatgctgaaggctatcacttggttgataccaccgtcggt
cgcgcgattctttcagacattttacctaagggcatgtcattcaccttaattaacaggcca
atgacgaaaaaagccatttctaaagtggttgacacttgctatcgaaaatttggcttgaag
gaaacggttatttttgcagaccaattgatgtacaccggctttaaatttgctacgcgcgcc
ggtgcttccattgggattgaagatatggaaattcctgatgataaagccgccattattgag
caagctgacaatgaggttcgtgagattgaagctcaatatcgttcaggtttggtaaccaat
ggcgagcgctacaataaagtcatcgatatttggtcacgtaccaatgaaatggttgctaaa
tcaatgatggccaaaattgctacggaagaagtggctacccgcgatggtaaaacagtaaga
caagagtcatttaaccctatctttatgatggcagactcaggagcgcggggctctgcagcg
cagattagacagcttgctggaatgcgtggattgatggcagccccagacggctcaattatt
gaaacaccaattactgcgaactttagagaaggattgaatgtattccaatacttcatttcc
actcacggtgctcgtaaaggtcttgctgataccgcgttaaaaacggcaaactcaggttac
ttgacccgccgcttggtggatgttgcccaagacgttgtcattaccgaagacgattgcggc
acagaacatggtatcctgatgcaacctctcattgagggcggtgacatcgttgaaccgtta
cacgaacgggtactgggacgagttgtggcaacggatgtatacattccaaatcaacaagaa
ccaattgttacagcaggtactttactcgatgaagattgggtggaaaaacttgagagattt
ggtgtggaccaagtccatgtccgttctccaattacctgtgaaacccgatttggactttgt
gccaaatgctatggtcgtgatctggcccgcgggcatttggtgaatacgggtgaagccgtc
ggtattatcgcagcgcaatccatcggggaaccaggaactcagctaaccatgcgtaccttc
catatcggaggtgcagcatctagagcaactgcagcaaataacattcagattaagaataaa
ggtattattcgtctgcataacatcaagactgtgtcgcaagagggcggcaacttagtggcc
gtatctcgttcaggagaagtgtctgtcgttgatgattttggccgtgagcgtgaacgctat
aagctgccatatggagccgtcttatctgtacatgacaatacgtccgccgaagcaggccaa
ataattgccacctgggatccgcatactcacccagttatttctgaagtaagtggtaggttg
aaattcgtcgatttgattgaaggcatgacgatgaaccgccaaacggatgaattaacaggt
ttgagcaacatcgtagttaccgatgctaagcaacgcacttctgccggtcgtgatttgcgt
ccgatggtgaaattggtttccgatgacggtgatgatatttatcttgccggtacaaatgtc
cctgcacagtattatttgccggttgatgccattattaattttgaagatggcagtgcggta
ggtgttggggatgttattgcacgtattcctcaagaacgttctaaaacacgtgatattacc
gggggtctacctcgggtagctgacctgtttgaagcaagaaaacccaaagatgcagccgtt
atggccgagatctctggtttagtcaacttcggtaaagagactaaaggtaagagacggttg
attatcactgcatccgagtatgaatctcatgaggaactgataccaaaatggcgtcatatc
tctgtatttgagggtgagcatgttgaacgtggggaagtaattgctgatggtccattgaat
ccgcatgacattctacgcttgctgggtgttggagccttggccaattacattgtaaatgaa
gttcaagacgtttatcgtttacaaggggttaaaatcaacgataagcacattgaagtcata
gtgagacaaatgttgcgtaagcgtatcattacctcagctggcgattccaaattcttggtt
ggtgagcaaattgaagaaagcgtaatgttgcaagaaaatgataagcttagcgctgaaggc
aaacaagttgctcaaggtacgcccatacttcttggtatcaccaaggcatcattggcgacg
gaatccttcatttctgctgcttcattccaggaaactactcgtgttctgacggaggcggct
gtaagtggaaaagtcgatgatttacgtgggttaaaagaaaacgtgatggtgggacgctta
attccagctggaacaggctacgcttaccatcaaggtcgtaaggcaaaacgcgctagagct
gcaagtactgagcatagcacgcatacggtgactgctagtgatgtggagcatgcattaagt
gaagcgcttaatgcagatcaccacgatcattaa
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