Legionella jordanis: NCTC11533_00658
Help
Entry
NCTC11533_00658 CDS
T06275
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ljr
Legionella jordanis
Pathway
ljr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11533_00658 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljr03019
]
NCTC11533_00658 (rne)
03009 Ribosome biogenesis [BR:
ljr03009
]
NCTC11533_00658 (rne)
Enzymes [BR:
ljr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC11533_00658 (rne)
Messenger RNA biogenesis [BR:
ljr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11533_00658 (rne)
Ribosome biogenesis [BR:
ljr03009
]
Prokaryotic type
rRNA processing factors
NCTC11533_00658 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
VEH11816
LinkDB
All DBs
Position
1:complement(670292..672214)
Genome browser
AA seq
640 aa
AA seq
DB search
MEKMLINATQTEEVRVALVKNKHLYDLDIECPTEVKKKGNIYKAIVTRREPSLDAVFVEY
GAKRQGFLPLKEIAPEYLSKNPEEFGDHKPPITSLIREGQELLVQVDKEERGNKGAALTT
YITLAGCYLVLMPNNPNSGGISRRIEGDDRDELKETLNALQLPDDMGLIIRTAGVGKSQE
ELQADLDMLCNQWQAIKQAYHNQLAPCLIHQEGDVIIRSIRDNLRKSIGEIIIDDHVSYT
KAKQYIEQVKPDFLPNLKLYNSTVPLFNFYQIESQIETAYQREVPLPSGGALVIDRTEAL
VSIDINSAKATSGSDIETTALNTNLEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQRDV
ENRLKEALKADRARIQVGRISRFGLLEMSRQRLRLSLGESAQEVCPRCEGRGTVRNIQSH
ALSIVRLIEEEALKEKTAEVQVQLPPEMATFIMNEKRQFIFNIEKRHNVEVLIIANPYLQ
PPHYEITRLKEDNVGKSKKPSYSLIQQPEVSLTRAEDAAKRDEPAVKPFSLPAAEKAHHS
SFIKRLWNSLFGTAETSPPGRQEKITGTVQQQKQPHAHNPQERRQPSGNRRRRSGNQQRS
SGNVQRKRPQGNQSSARVVPMKPADQGKKKAAANKESQDN
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgctaataaatgctactcaaaccgaagaggtccgagtagcgctggttaaa
aataaacatctctatgatttggacattgaatgtcctacggaagtaaagaaaaaggggaat
atttacaaagcgattgtgacgcgtcgtgagccaagtcttgacgcagtatttgttgaatat
ggcgcaaaacggcaaggttttctgcctttaaaagaaattgcgccagagtatctcagtaaa
aaccctgaagaattcggtgatcacaaaccccctataacctctctaatccgcgaaggacaa
gaattgcttgtgcaagtggacaaagaagaacgaggaaacaagggggcagcgctcaccacc
tacattaccttggcaggttgctatctggtgctgatgcccaataatccgaattcaggcggc
atttcccgtcgcattgaaggcgatgaccgagatgaattgaaagaaaccctgaatgctttg
caattaccggatgatatgggattaattatccgcaccgcaggagtcggtaaaagccaggaa
gagctacaagcggatctggatatgctgtgcaaccaatggcaagccattaagcaagcttac
cacaatcaattagctccttgcctaatccaccaggaaggcgatgtcatcatccgctccatt
cgcgataatttgcgcaagtccattggcgaaatcatcattgatgatcacgtttcctatact
aaagccaaacaatacattgaacaggttaaaccggatttcctacccaatctcaagctgtac
aacagcacggttcctttgtttaatttttaccagattgaaagccagatagaaacggcttac
caacgtgaagttccgctcccctctggcggtgccttggtcattgaccgcaccgaagccttg
gtttcaattgacatcaactcggctaaagcaaccagtggttccgacattgaaacaactgct
ttaaataccaatttggaagcggctgacgaaattgcacgtcaattacgtttaagggattta
ggtggcttagtggtcattgatttcatcgacatgagctccagtaaaaatcaaagggacgta
gaaaatcgcttaaaagaagccttaaaggccgacagagcgcgtatacaggtgggccgtatc
tctcgtttcggtttgcttgaaatgtctcgtcaacgcttgcgtctttctttaggtgaaagc
gcacaagaagtttgcccgcgttgtgaaggaagaggcacggtgagaaatattcaatctcat
gccttatccattgtacgcctgattgaagaagaggctttaaaagaaaaaacagctgaagtt
caagtacaactgccaccagaaatggcaacattcatcatgaatgaaaagcgtcagttcatt
ttcaacattgagaaacgtcacaatgtggaagtattaatcattgccaatccttatttgcaa
cctccgcattacgagattactcgtttgaaagaagacaacgtcggcaagagtaaaaaaccc
agctactcattaatccagcagccagaagtcagtttaactcgtgccgaagatgcagcaaaa
cgcgatgaacccgcagttaaacctttttcactgcctgccgctgaaaaagctcatcatagt
agcttcatcaaaagattgtggaatagtctttttggcacagctgagaccagtcccccagga
cgtcaggagaagattactggaacagtccagcagcaaaaacaaccccacgcgcataacccg
caggaaagaagacaaccttcaggcaatcgtcgtcgccgttcaggcaaccaacaacgtagt
tctggtaatgtgcaaagaaaaagaccacagggcaatcaatccagtgcacgcgtcgtccct
atgaagcctgctgatcaaggaaaaaaaaaagcagcagccaataaggaatcccaagacaac
taa
DBGET
integrated database retrieval system
