Lactobacillus kefiranofaciens subsp. kefiranofaciens: WANG_1880
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Entry
WANG_1880 CDS
T01526
Name
(GenBank) ATP-dependent RNA helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lke
Lactobacillus kefiranofaciens subsp. kefiranofaciens
Pathway
lke03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lke00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WANG_1880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lke03019
]
WANG_1880
03009 Ribosome biogenesis [BR:
lke03009
]
WANG_1880
Enzymes [BR:
lke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WANG_1880
Messenger RNA biogenesis [BR:
lke03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WANG_1880
Ribosome biogenesis [BR:
lke03009
]
Prokaryotic type
rRNA helicases
WANG_1880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Dor1
YwhD
Motif
Other DBs
NCBI-ProteinID:
AEG41575
LinkDB
All DBs
Position
2077374..2078831
Genome browser
AA seq
485 aa
AA seq
DB search
MKFSELGLNDALLKAIKRSGFEEATPIQAQTIPLALAGKDVIGQAQTGTGKTAAFGLPIL
QTINKEEKVIQAVIIEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIRSLKHHV
PSILVGTPGRLLDHLKRGTVSLDNVNTVVLDEADEMLDMGFIQDIESILKYAKNRNQVLL
FSATMPKPILRIGEKFMDHPEIVQIKAKELTADLIDQYFVRAKESEKFDIMCRLIDVQGP
DLALVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQSRRMTVLKRFREGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQKGISVTFVTPNEIGYMRTIEQLTK
KKMSTLRPPTDDQALRGQLKQAKSEIEDLMKGDLGKYTQDASELLDNYSALDLVAAFLKN
LSKDSTDVKVKITPERPLPYRGDGHHRGGHGRGRNHARGNHRRRRDNNSYRHNGNRGKRG
RRGGH
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagaattaggattaaacgacgcactacttaaggcgatcaagcgctcaggt
tttgaggaagcaacgccaattcaggcccagactattccgcttgctttagcaggcaaagat
gtaattggccaagctcagactggtactggtaaaacagcagcttttggcttgccaatttta
caaactatcaataaagaagaaaaggtaattcaagcggtaattattgaaccaacgcgtgaa
ttagctattcagacgcaagaagagctttttcgcttaggtcgtgatgagcatgctcacgtg
caagtcgtttatggcggggccgatattggccgccagattcgctcattaaagcaccatgta
ccttcaattttggttgggacaccaggtcgtttattggatcacttaaagcgcggtactgtt
agcttagataatgtaaatactgttgttttggatgaagctgatgaaatgctggatatgggc
tttattcaagatattgaaagtattttaaagtacgctaagaatcgtaatcaagtgttgctt
ttcagtgcgacgatgcctaaaccaattttgcgcattggtgagaaatttatggatcacccg
gaaatcgttcaaattaaagctaaggaattaactgctgatttgatcgatcaatattttgtt
cgtgctaaagaatccgaaaaattcgatattatgtgtcgtttgattgatgttcaaggacca
gatttagctcttgtcttcggtagaactaagcgccgcgtagatgagttaacacgtggtttg
caagctcgtggctacaatgcggcagggattcacggtgacctttctcaaagccgtagaatg
actgtcttgaagaggttccgtgaaggtaagttggatatcttagttgcgacagatgtagct
gctcgtggcttggatatttctggcgtaactcacgtttataactacgatattcctcaagat
ccagattcttatgtacaccgtatcggtagaactggtcgtgctggtcaaaaaggaatctca
gttacctttgtaacgccaaatgaaattggctatatgagaaccatcgaacaattgactaag
aagaagatgtcaacacttcgtccgccaacagatgatcaagctttgcgtggtcaattgaag
caggctaagtcagagattgaagacttgatgaaaggtgacttaggcaagtatacgcaagat
gctagtgaattattagataattactcagctcttgacttagtagctgcctttttaaagaat
ctgtcgaaagattcaaccgatgtcaaggtgaagattacacctgaaaggccattgccatat
aggggtgatggtcatcatcgtggtggtcatgggcgtggtcgtaatcatgcacgtggcaat
catcgccgtcgccgtgacaataatagttatcggcataacggcaatcgcggtaaacgagga
cgccgcggcggtcattaa
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