Lactobacillus kefiranofaciens subsp. kefiranofaciens: WANG_1886
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Entry
WANG_1886 CDS
T01526
Name
(GenBank) Transcriptional repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lke
Lactobacillus kefiranofaciens subsp. kefiranofaciens
Pathway
lke03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lke00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WANG_1886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lke03400
]
WANG_1886
Enzymes [BR:
lke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WANG_1886
DNA repair and recombination proteins [BR:
lke03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WANG_1886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
UB2H
DUF3906
Y_Y_Y
IstB_IS21
AAA_22
EryCIII-like_C
Motif
Other DBs
NCBI-ProteinID:
AEG41581
LinkDB
All DBs
Position
2083025..2086519
Genome browser
AA seq
1164 aa
AA seq
DB search
MRLTEILKQDQDLNNFIAKTKQVKNSLITGANAGAFSLLLKQIVSELKAPLILVEENESK
AQNLYGELSAILAEGTAQIFPVDATIATQTAVSSPDELSSRIQVLNFLLSGKPGIVVTTP
QGLQYKLSNPADFAQARRIFAPEKEYELPELNSWLVQSGYHKEALVAKPGEFAIRGDILD
IYPLDQENPVRIEFFGDEIDTIKEFDLATQRSQKEIDQVEIAAAQDRVFSSAAIQKAAEQ
IKKDMADAPAPDKAVKDHFTVVLDDLNAGGLPKSYAFLVDYLIAKPSSLVEYLAKNGQIL
LDDLPLIKQAVETVDQQNAAFIDDELKTGAMLPKQSLRFDYDKVLSKDKHHRIYFSLFQR
SMGRLRLGQMLNWQTREPEQFFSQMPLIKTELESYRKSGQTVILQADNEKRARQIDQTMV
DFGLNLPIVSRNEIVEKRAQIVVTGFTSGFTLPSVNLVYLTERELFNKRPHRKKRIKTLE
NAQRLRNYTELKPGDYVVHVNHGIGRFEGIKTLENNGVKRDYITITYQHGDQLFVPADQL
SLVQKYVASEGKTPHINKLGGSEWAKTKRKVQSKVEDIADELIDLYAKRESEKGFAFSPD
DDLQKKFDDAFPYPETLDQLRSIKEIKADMEKPKPMDRLLVGDVGFGKTEVALRAAFKAI
RDNKQVAFLVPTTILAQQHYETIQDRFKDFPVNTAMLSRFQTPAESKEIIDQLEAGKIDL
VVGTHRLLSKDVHFKDLGLLIVDEEQRFGVKHKEKLKQLKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPQNRYPIQTYVMEQIPSVVKDACLREMQRGGQVFYLHNRIGDIDETV
EKLQQLIPTARIASAHGRMSQNQLEDVLYRFLNGEFDILVTTTIIETGIDMPNVNTMIIE
DADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLSDAIKVRKGKKAAKKSNAEIDLQLEAY
IPDTYIGDQEEKIEFYKKIKTVNSQEELNKIEDELIDRFGDYPAAVENLLAIAGLKVDAD
LAQALNVIKTGNKIKVEFNVAASHELEGPNIFRALEHVSLKARISMSPEKRMVVLLLLPD
GMKNRVLFNELATFLGAASDIIQR
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttgacagagattttaaaacaagatcaagatttaaataattttattgcaaaaact
aaacaagtaaagaattcactaatcactggcgctaatgccggtgcttttagtctactctta
aaacagattgtatctgaacttaaagcacctctgattttggttgaagaaaatgagagtaag
gcacaaaacttatatggagaattaagcgctatcttagcagaaggaactgcgcaaatcttt
cctgtagatgcaactattgctacacaaacagcagttagttctcctgatgaattgagtagc
cgtattcaggtgcttaattttttattgagtggaaaaccaggtatcgtagttacgacaccg
caaggtttgcaatataaattgtcaaatccagcagattttgctcaagcaagacgaattttt
gcgccagaaaaggaatatgaacttcccgaattgaatagttggctagtgcaatcaggctat
cataaagaagctttagttgctaaaccaggagaatttgcaattcgtggggatattttagat
atttatccgttagatcaagagaatccggttagaattgaattttttggtgacgaaattgat
acaattaaagaatttgatttagccacccagcgcagtcaaaaagaaatcgatcaggtagaa
attgcggctgctcaggatcgagttttttctagtgctgctattcaaaaagctgctgaacag
ataaaaaaggatatggcagatgcacctgcgccagataaagcggtgaaagatcattttact
gtagtcttagatgatttgaatgctgggggactgcctaaaagctatgcatttttggttgat
tatttaattgctaagccaagcagcttggtagaatatttggctaaaaatgggcaaatttta
ttagatgatttgcctttaatcaagcaagctgtagaaaccgttgatcagcagaacgcagct
tttattgatgatgaattgaaaactggtgcgatgctaccgaagcaaagtttgcgttttgac
tatgataaagttctatctaaagacaagcaccatcgaatctatttttcattatttcaaaga
agcatggggcgtctgcgtttagggcagatgcttaactggcaaacacgggaacctgaacag
ttctttagccagatgcctttgattaaaactgaattggaatcttatcgaaaaagtggtcaa
acggttattttgcaggctgataatgaaaaaagagctcgtcagattgatcaaacaatggtt
gattttggcctgaatttgccaattgttagccgaaatgaaatcgttgaaaaacgagcacaa
attgtggttaccggttttacaagcggttttactttgccatcagtcaatttagtttatctg
actgaacgagaattatttaataaacgaccacaccgtaaaaagcgtattaaaaccttagaa
aatgcccaaagactacgtaattatactgagttaaaaccaggtgattatgttgtccatgtt
aatcatgggattggccgctttgaagggattaaaactttagaaaacaatggggtcaagcgt
gattatatcaccattacttatcagcacggcgatcagctttttgttccagcggatcaactg
agtttagttcaaaaatatgtggcttctgaagggaaaacgccgcatatcaacaaactaggt
ggcagtgaatgggctaagactaagcgtaaggttcaatctaaggttgaggatatcgccgat
gaattaatcgatctttatgctaagcgtgaatcggagaagggttttgccttttcaccagat
gatgatttgcagaagaagtttgacgatgcttttccgtatccagaaacactagaccaattg
cggtcgattaaagaaattaaagcagatatggaaaaaccgaagccaatggatcgcttacta
gttggggatgttggttttggcaaaactgaagtagcacttcgggcagcatttaaggctatt
cgagataataaacaagtagcctttttagtaccaactactattttggcgcagcagcattat
gagaccattcaggatcgttttaaagactttccggtgaatacagcaatgttgtcccgtttt
caaaccccagctgaatccaaagagattattgaccaacttgaagcaggcaagattgactta
gtggtggggacacaccgtctgctatcaaaagacgttcattttaaggatttaggtctgtta
attgttgacgaagagcagcgctttggcgttaagcataaagaaaagcttaaacagctgaag
gcaaatatcgatgttttaacattaactgccacgccaattccgcggactttacacatgtca
atggttggcgtgcgtgatttatctgtcatggagacaccgccacaaaataggtatccaatt
caaacttatgtaatggaacagattccgagcgtagtaaaagacgcatgtttgcgtgaaatg
cagcgtggtggtcaagtcttttatttgcataatcgaattggcgatattgatgaaactgta
gaaaaactgcagcagcttattccgacagcgcgcattgctagtgcccatggacgaatgagt
cagaatcaattagaggatgtcttataccgctttttaaacggggaatttgatattttagta
actactacgattatcgaaactggaattgatatgcccaatgttaatacaatgattattgaa
gatgcggatcattatgggttgagtcagctctatcagctgcggggccgcattggacgtagt
gcacgtttagcttatgcttattttctttatcagcctaataaggttttaactgaagttggt
gaaaaacgactagatgcaattcgtgactttactgaattagggtcaggttttaagattgcg
atgcgtgatttatctattcgcggagctggcaatatgttaggtgcacagcagcatggtttc
attgatagcgtagggtacgatttgtattcacaaatgctgagtgatgcgattaaagttcgt
aaaggcaaaaaggcggccaaaaagtctaacgctgagatcgatttacaattagaggcctat
attcctgatacttatattggtgatcaggaagaaaagatcgaattttataaaaagatcaag
actgttaatagccaagaagaattaaataagatcgaggatgaattaattgatcgtttcggc
gattatccagcagctgtagagaatttattagctattgctgggttaaaagttgacgctgat
ttagcgcaggcgttaaatgtaatcaaaactggcaataagattaaagtggaatttaacgtt
gctgcttcgcatgaattagaaggcccgaatatttttagagcacttgagcatgttagttta
aaagctcgaatcagtatgagcccagaaaagcgcatggtagtattgttattgttgccagat
ggcatgaagaatcgagttttatttaatgaattagccacctttttaggtgctgcgagtgat
attattcaaagatga
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integrated database retrieval system
