Lentilactobacillus kefiri: DNL43_00305
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Entry
DNL43_00305 CDS
T06710
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lkf
Lentilactobacillus kefiri
Pathway
lkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNL43_00305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkf03019
]
DNL43_00305
03009 Ribosome biogenesis [BR:
lkf03009
]
DNL43_00305
Enzymes [BR:
lkf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DNL43_00305
Messenger RNA biogenesis [BR:
lkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DNL43_00305
Ribosome biogenesis [BR:
lkf03009
]
Prokaryotic type
rRNA helicases
DNL43_00305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QGV23847
LinkDB
All DBs
Position
complement(51438..52967)
Genome browser
AA seq
509 aa
AA seq
DB search
MKFSELGLSDHLLSAISKSGFEEATPIQAETIPMVLKGEDVIGQAQTGTGKTAAFGLPIL
QKIDFDNPNVQALIISPTRELAIQTQEEIYRLGKDEKAKVQVVYGGADIRRQINALKGHP
QIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEMLNMGFLDDIEDIIKQTPKERQTLLF
SATMPAQIKRVGVQFMTDPHQVTIKAKELTTDLIDQYYVRVKEYEKFDTMTRFFDVQDPE
VTIVFCRTKRRVDEVAKGLQARGYKAAGLHGDLTQARRTQIMQEFKAAKIDILVATDVAA
RGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGVSITFATPNEMDYLREIEKLTKV
RMLPLKPPTIQEAFVGQLNSAEEDIAKLIKKTNTDKFEKMADKLLDEYEATDLVAALLNE
VTRDNVKVKITPERPLSRHGHGHGHGGHRNDRRGGGHGGHYKGSKNRRNGDRSNSGRNRG
HHESSNDRKHSDKRSGSNNKKRRFTIKNK
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggattatcagaccacttattatcagcaatttctaaaagtggt
tttgaagaagcaacgccaatccaggccgaaaccatcccaatggttcttaaaggtgaggat
gttatcggtcaagctcaaactggtactggaaaaactgccgcatttggtttaccaatctta
cagaagattgatttcgacaatccaaatgttcaagccctcattatttcaccaactcgagag
ctggctatccagacacaagaagaaatctatcgattaggaaaagatgaaaaagccaaggtt
caagttgtttatggtggagcagatattcgccgtcagatcaacgcattgaagggccatcca
cagattgtggttggaacaccaggccgaattcttgatcatattagacgtcatactttaaag
ttagagcacgttaagacattagttttagatgaagccgacgagatgttaaacatgggattc
cttgacgatatcgaagatattatcaagcaaactcctaaagaacgtcagactttgcttttc
tctgcaaccatgccagcccagattaaacgagtaggggttcagtttatgactgatcctcat
caagttacaatcaaggctaaagaattaacaactgatttaatcgatcagtattatgtacga
gtaaaagaatacgagaagttcgatacaatgactcgtttctttgatgttcaagatcctgaa
gttaccatcgtcttctgtcggactaagcgccgtgttgacgaagttgccaaaggattacag
gcccgtggctacaaggctgccggccttcatggtgatttaactcaagcccgccggactcag
attatgcaagagttcaaggcagctaaaattgatatcctggtcgctaccgatgtagctgct
cgtgggattgatatttccggtgttacccatgtttataattatgatattcctcaagatcct
gatggatatgtccatcgtgttggtcgtaccggccgtgccggtaagcatggtgtttcaatc
acctttgccacaccaaacgaaatggattatcttcgtgaaattgagaagttaaccaaggtg
cggatgctgcctttgaagccacctacaattcaggaagcctttgttggtcaattaaattct
gctgaagaagatattgccaagttaatcaaaaagacgaatactgataaatttgagaagatg
gctgacaagctgcttgacgagtatgaagcaactgatttggttgctgccttacttaacgaa
gtcactcgtgacaacgtcaaagttaagattacgccagaacgcccattgtcacgtcatggc
catggacatggtcatggtggtcatcgcaacgatcgtcgcggtggcggtcatggtggtcat
tacaagggttcaaagaaccgtcgtaatggtgaccggagcaactctggtcgaaatcgtggt
catcacgaaagcagcaatgatcgtaagcattctgacaaacgttcaggaagcaataacaag
aaacgtcgttttacgattaaaaataagtaa
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