Lentilactobacillus kefiri: DNL43_01570
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Entry
DNL43_01570 CDS
T06710
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lkf
Lentilactobacillus kefiri
Pathway
lkf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lkf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DNL43_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lkf03019
]
DNL43_01570
Messenger RNA biogenesis [BR:
lkf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DNL43_01570
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
QGV24059
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Position
290002..291684
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AA seq
560 aa
AA seq
DB search
MKKLNVKNNEAAIYGVGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDDLLGVDYVIPDYQ
YLVENKDKIKALVITHGHEDHIGGVPYLMKVLNVPIYAGPLAMALIKNKLEEHGLLNSVE
LHEISDKSVLKFRKMKVSFFRTTHSIPDTVGIAVHTPVGVIVETGDYKFDLTPVTNQPPD
LQEMARLGAEGVLCLMSDSTNAEKPIWTHSEKWVGNSIAHIFDNIKERIIFATFASNISR
IKTACDNAMAHGRKIAVFGRSMDAAIVNGRELGYLDIPDDAFVDAHELQSLPANKTLILC
TGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTTSVNSVINKLEEAGANVIH
GRVNNIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMLKIHTELAEQCGVPMDHSFIMQ
NGDVLALSKDTARMAGHFTAGDVYIDGSGIGDVGNVVLRDRQLLSEEGIVVVVATINLNN
QEIQSGPDILSRGFVYMRESGELLDEGRRRVFKTIRKSMRAKKATESSIRNAIIDDLQEF
LYDKTERHPMILPMLIMNGK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaactaaacgtcaaaaataacgaagcagctatctatggcgttggtggtttggga
gaaattggtaagaacacttatggtattcaattccaggatgaaatcatcctgattgatgcg
ggaatcaaatttcctgaagatgacctgttaggtgtcgattatgttattccagactaccag
tatctggttgaaaataaggataagatcaaagctttggtcatcacccatggtcacgaagat
catattggtggtgtcccatatttgatgaaggttttaaacgtccctatttatgccggacca
cttgcgatggcgcttatcaaaaataaattggaagaacatggcttactgaattctgttgaa
ttacacgaaatcagtgataagtctgttctgaagttccgaaaaatgaaagtttcattcttt
agaacgacccactcaattcccgatactgtcggaattgcagtgcacactccggttggggta
atcgtggaaactggtgattataaattcgacctcacaccagtgaccaaccagccgcctgat
cttcaagaaatggcccgattgggtgctgaaggcgtcctttgtttgatgtctgacagtacg
aatgctgaaaagccaatctggacccactctgaaaaatgggttggaaactcaatcgcccac
atattcgacaatattaaagaacgaattatctttgcaacattcgcttcaaatatttctcga
attaagactgcttgtgataatgcaatggcccatggcagaaagattgctgttttcggccga
agcatggatgcagcgatcgttaatggacgtgaattagggtatctcgatattcctgatgat
gcgttcgttgatgctcatgaactacaatcacttccagccaataaaactttaatcttatgt
accggatctcaaggtgagccaatggctgccctttcacggattgccaacggtacccaccgt
cagatctccattcagcctggcgacacggttatcttttcaagtaacccaattccaggtaac
acaaccagcgttaacagtgttattaacaagcttgaagaagccggtgccaatgttattcat
ggccgagttaacaacattcacacttccggtcatggtggccaggaagaacaaaagttaatg
ttgcgattaatgaagcctaaattcttcatgccaattcacggtgaataccgaatgcttaaa
attcatacggaattagctgaacaatgtggtgttccaatggatcacagcttcatcatgcaa
aatggtgatgttttggccctctcaaaggacactgcccgaatggctggtcatttcaccgct
ggcgatgtttatatcgacggcagcggaatcggtgatgtcggcaacgttgtgttacgagat
cgtcaattgctttccgaagaaggaattgtcgtggttgttgccacaatcaatttgaataac
caggagatccaatcaggtcctgatattctctcacgtggttttgtctacatgcgtgaatcc
ggtgaacttttagatgaaggtcgccgtcgagtattcaagacaattcgaaaatcaatgcgc
gctaagaaagccactgagtcttctattagaaacgccatcattgatgatcttcaggaattc
ttatatgacaagactgaaagacatccaatgattttaccaatgttaatcatgaatggtaaa
taa
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