Leuconostoc kimchii: LKI_03880
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Entry
LKI_03880 CDS
T01233
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lki
Leuconostoc kimchii
Pathway
lki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LKI_03880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lki03019
]
LKI_03880
03400 DNA repair and recombination proteins [BR:
lki03400
]
LKI_03880
Enzymes [BR:
lki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LKI_03880
Messenger RNA biogenesis [BR:
lki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LKI_03880
DNA repair and recombination proteins [BR:
lki03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LKI_03880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HHH
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ADG40318
UniProt:
D5T219
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All DBs
Position
743304..745115
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AA seq
603 aa
AA seq
DB search
MQNVNPQTILREKFGYDNFRTGQLEVIEKVLAHQHALAIMPTGGGKSITYQLPAMLFDGI
TLVISPLISLMKDQVDGLDAMGIAATFLNSTLSGQVQAQRMSDLRQGVYKMLYVSPERLE
IPSFFSFIQQLPIELIAIDEAHVMSQWGHDFRPSYLNILPLLAEIPGHPAVLGLTATATD
RVRQNLQQLLEVPDENTILTGFARDNLALKIAHNVDKRQYVQDYLRENKEHSGIIYAATR
KQVDELYDFLNKKGIKAGHYHAGLPERERQAMQEAFLFDEVQVIVATNAFGMGINKPNVR
FVIHYSVPGNIEAYYQEIGRAGRDGLPSEAILLYAPQDIHLQEFFVQKSEGTEAHKQNEY
NKIREMNAFANTQTCLPRYLLGYFGEMIDHDCGQCSNCLDSREMVDVTIDSQRVLANVVR
MNQSFGKAMVAKVLKGSQDAAVKKYDYLMKLPTYGLMKDRTIKDLSSFIDYLTADGYLRI
EGGEFPVLKVTEMGARVLKGQLVVEKRLNRRVIAQQKVTSAAKGLKLSDSDNRLFATLKA
KRLELAREAGIAPFLIFSDKTLMNMAILRPKTAEEFLAISGVGEKKFDIYHDAFAEVLKN
DMN
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacgtgaatccgcaaacaattttaagagaaaaattcggttatgataactttcgt
acaggacaattggaagtgattgaaaaagtactagcgcatcagcatgcactagccattatg
cccactggtggtggaaaatcaatcacctatcaattaccagcgatgttatttgatggcatc
acgttggtgatttcgccattaatatcattgatgaaggatcaagtcgatggcttagatgcg
atgggaattgcagcaacctttttaaattcaacgttgagtggtcaagtccaggcacaacgc
atgtctgacttgcgtcaaggtgtttataaaatgctttatgtatcccctgaaaggctagaa
attccaagtttttttagttttattcagcaactaccaatcgaattaatagccattgatgag
gcgcatgtcatgtcacaatggggccatgattttcgaccaagttaccttaatattttaccg
ttattggctgaaattcctggtcatccagcggttttgggtttgacagcgactgcaacagat
cgtgttcgtcagaatttacagcaattgttagaagtaccggatgaaaatacgattttaaca
ggctttgctcgtgataatttggcgttaaaaattgcacataacgttgataaacggcaatat
gtacaagattatttacgtgagaataaagaacacagtggcattatttatgctgctacgcgc
aagcaagtagatgaattgtacgattttttaaataaaaaaggcatcaaggcggggcactat
catgctggtttaccagagcgtgaacgtcaagcgatgcaagaggcttttttgtttgatgaa
gtacaagtgattgttgcaaccaatgcgtttggcatgggtattaacaagccaaacgtacgc
tttgttattcactactcagtaccgggaaatattgaagcctattatcaagaaattggtcgt
gctgggcgtgacgggttaccatctgaggcgatattattatatgcaccacaagatattcat
ttacaagaattttttgtccaaaaatcagaagggacagaagcgcataagcaaaatgaatat
aacaaaattcgtgaaatgaatgcatttgctaacacacaaacgtgtttaccaagatattta
ttaggttattttggggaaatgattgatcatgattgtggtcagtgttctaattgtttagat
tcacgcgaaatggttgatgtcacaatcgattctcagcgtgtgttggccaatgttgtacgc
atgaaccaaagctttggaaaagcgatggttgctaaagttttaaaaggctcacaagatgcc
gctgtgaagaagtatgactatttgatgaagttacccacatatggcttgatgaaagacaga
acgattaaagacctaagcagttttattgactacttaacggctgatggctatctaagaatt
gagggtggtgagtttcctgtcttaaaagtcaccgaaatgggcgcacgtgttttaaaaggt
cagctcgttgtggaaaagcgactaaatcgacgcgtgattgcacaacaaaaagtcacatca
gcagctaagggacttaaattgtctgatagtgacaatcgattgtttgctacattgaaagct
aagcgtttagagttggcacgtgaagcgggcattgcgccgtttttgattttctcggataaa
accttaatgaatatggcaattttacgacctaaaacggccgaagagtttttagctatttct
ggtgttggtgagaaaaagtttgatatttatcatgacgcatttgcagaagtactaaaaaat
gatatgaattaa
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