Leuconostoc kimchii: LKI_05530
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Entry
LKI_05530 CDS
T01233
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lki
Leuconostoc kimchii
Pathway
lki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LKI_05530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lki03019
]
LKI_05530
03009 Ribosome biogenesis [BR:
lki03009
]
LKI_05530
Enzymes [BR:
lki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LKI_05530
Messenger RNA biogenesis [BR:
lki03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LKI_05530
Ribosome biogenesis [BR:
lki03009
]
Prokaryotic type
rRNA helicases
LKI_05530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
NAT10_TcmA_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADG40647
UniProt:
D5T2Z8
LinkDB
All DBs
Position
1072430..1074028
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AA seq
532 aa
AA seq
DB search
MKFSELGLSQDILDAITTHGYVEATPIQEKTIPLTLSGRDVIGQAQTGTGKTAAFGLPIL
EHIDLNNKNIQALIVSPTRELAIQTADELKKLGRDKHVDVQVVFGGSDIRRQIQNLKSHP
QILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEMLNMGFLEDIESIIKNTPADRQTLLF
SATMPPAIKRIGVKFMTNPEHIQIEAKELTTDLVDQYFVRMRENEKFDTMTRIFDVQAPK
LAIVFGRTKRRVEELSRGLEARGYHAAGLHGDLTQQMRSRVLAQFKSHEINILVATDVAA
RGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGVSVTLVAPNEMDYLRAVEDLTKK
RMTALEPASLQEARVGKIKNAAGEVDQIVNAVDVKDIQSEVDKLTSKYSSEQLAAALLSS
VADLEKQNTPVEITRERPLPRRRGGSGGSRNGGGDRRRGGNGGGYRGNRDRRGNGESSRN
GGGQRRSGRDGGSASSERRFGDYKRRDGRSTERHSNGGAPRQRREFTVREKD
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttagtgaattaggtttgtcgcaggatattttagatgctattacaacacatggt
tatgtggaagcaacaccaatccaagaaaagacaattccgttaactttgtctggtagagat
gttattggacaagcgcaaacaggaactggtaaaacagcagctttcggtttgccaatatta
gaacatattgatttaaacaataaaaatatacaagcattaattgtatcaccaactcgtgaa
ttggctattcaaaccgctgatgaattaaagaaattgggtcgtgataagcatgtcgatgta
caggttgtctttggtggatctgatattcgtcgtcaaatccaaaatttgaagtcacatcct
caaattcttgttggtacaccaggtcgtttacttgaccatatcaaccgtaagaccgttaaa
attgacaatgtaaaaacattagtattggacgaagctgatgaaatgttaaacatgggcttc
ttggaagatattgaatcaattattaagaatacccctgctgatcgtcaaacactactattt
tcagcaacgatgccaccagcaattaagcgcatcggtgttaagttcatgacaaatcctgag
catattcaaattgaagcaaaagaattaacaactgatttagttgatcaatactttgttcgt
atgcgcgaaaatgaaaagtttgataccatgacacgtatttttgatgtgcaagcaccaaag
ttagcgattgtctttggccgaacaaagcgtcgcgttgaggaattatcacgtggattagaa
gcacgtggttatcatgcagctggattgcacggtgatttgacacaacagatgcgttcgcgt
gttttggcacaatttaagtcacatgaaatcaacatattggttgcgactgatgtagcagca
cgtggcttagatgttaaagacgtttcccacgtttataattttgatattccacaagaccct
gaatcatatgtccaccgtattggacgtactggacgtgctggagcaaagggtgtgtctgtc
acacttgttgcgccaaatgaaatggattacttacgtgccgttgaagacttaacaaaaaag
cgtatgacagcacttgaaccagcttctttgcaagaagcacgtgttggtaaaataaagaat
gctgcgggcgaagttgaccaaattgttaatgctgtagatgttaaagacattcaatcagaa
gttgataagttgacgtcaaagtattcatctgaacagttagcagctgcattattgtcttct
gttgctgatttagagaagcaaaacacacctgttgaaattacacgtgaacgtccattacca
cgtcgtcgtggtggtagcggcggatcacgtaatggtggtggcgatcgtcgtcgtggtgga
aacggtggtggttaccgtggtaatcgtgatcgtcgcggtaatggggaatcatcgcgtaac
ggcggtgggcaacgtcgttcaggtcgtgatggtggttctgcaagtagcgaacgtcgtttt
ggtgattacaaacgtcgtgatggccgttctactgaacgtcattcaaatggtggtgcacct
cgtcaacgtcgtgaatttaccgtacgtgagaaagattaa
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